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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16488 and 16489 are separated by 1735 nucleotides
16489 and 16490 are separated by 32 nucleotides
16490 and 16491 are separated by 194 nucleotides
16491 and 16492 are separated by 595 nucleotides
mRNA_8120: 16488 - Hypothetical Protein, at 462,475 to 468,297
16488
mRNA_8121: 16489 - Hypothetical Protein, at 470,033 to 470,823
16489
mRNA_8122: 16490 - K08010 NCF2, P67PHOX neutrophil cytosolic factor 2, at 470,856 to 473,193
16490
mRNA_8123: 16491 - Hypothetical Protein, at 473,388 to 473,878
16491
mRNA_8124: 16492 - HMMPfam-FHA domain-PF00498,ProSiteProfiles-Forkhead-associated (FHA) domain profile.-PS50006,SMART-Forkhead associated domain-SM00240,SUPERFAMILY--SSF49879, at 474,474 to 477,508
16492
Group
Condition
mRNA
_8120
mRNA
_8121
mRNA
_8122
mRNA
_8123
mRNA
_8124
16488
16489
16490
16491
16492
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
-1.1
-0.2
N.D.
-0.7
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.3
-0.7
N.D.
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-1.6
+0.3
N.D.
-0.1
growth on ricinoleic acid
YNB Glucose
-0.4
-0.2
-0.3
N.D.
+0.0
growth on ypd
YPD
+0.1
-0.1
-0.1
N.D.
-0.6
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
+0.5
-0.1
N.D.
-1.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
-0.2
-0.5
N.D.
+0.7
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
-0.4
+0.1
N.D.
-0.4
auxotrophy
YNB Glucose
-0.3
+0.3
-0.0
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
-0.1
-0.3
N.D.
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.2
+0.2
N.D.
-0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.6
+0.0
N.D.
-0.3
growth on oleic acid
YNB Glucose
-0.1
+0.8
-0.2
N.D.
-0.4
growth on oleic acid
YNB Oleic Acid
-0.0
+0.7
-0.2
N.D.
-0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.1
+0.3
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
+0.3
+0.1
N.D.
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.2
+0.2
N.D.
+0.4
auxotrophy
Dropout Complete
-0.3
+0.6
+0.2
N.D.
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
+0.3
+0.1
N.D.
+0.8
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.8
+0.4
N.D.
-0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.9
+0.1
N.D.
+0.1
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