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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16496 and 16497 are separated by 484 nucleotides
16497 and 16498 are separated by 242 nucleotides
16498 and 16499 are separated by 438 nucleotides
16499 and 16500 are separated by 309 nucleotides
mRNA_8128: 16496 - KOG0526 Nucleosome-binding factor SPN, POB3 subunit, at 485,757 to 486,942
16496
mRNA_8129: 16497 - KOG0543 FKBP-type peptidyl-prolyl cis-trans isomerase, at 487,427 to 488,552
16497
mRNA_8130: 16498 - BLAST transcription factor [Pseudozyma hubeiensis SY62], at 488,795 to 491,438
16498
mRNA_8131: 16499 - KOG2431 1, 2-alpha-mannosidase, at 491,877 to 495,566
16499
mRNA_8132: 16500 - SUPERFAMILY--SSF52047, at 495,876 to 497,390
16500
Group
Condition
mRNA
_8128
mRNA
_8129
mRNA
_8130
mRNA
_8131
mRNA
_8132
16496
16497
16498
16499
16500
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.2
-0.1
-0.3
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.1
-0.6
-0.2
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.4
-0.5
-0.0
-0.5
auxotrophy
YNB Glucose
N.D.
-0.3
+0.3
-0.2
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.2
-0.3
-0.1
+0.0
growth on oleic acid
YNB Glucose
N.D.
-0.4
+0.0
+0.2
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.1
-0.9
+0.2
+0.2
auxotrophy
Dropout Complete
N.D.
+0.4
-0.3
-0.2
-0.4
growth on oleic acid
YNB Oleic Acid
N.D.
-0.3
+0.4
+0.3
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.5
+0.5
-0.2
+0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.1
+0.5
-0.2
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.5
+1.2
-0.1
-0.3
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.3
+0.4
+0.0
+0.2
growth on ricinoleic acid
YNB Glucose
N.D.
-0.4
+0.8
+0.0
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.0
+0.2
-0.1
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.3
+0.6
-0.2
-0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.1
-0.5
+0.6
+0.4
growth on ypd
YPD
N.D.
+0.4
-0.1
+0.5
-0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.2
+0.6
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.3
+0.2
+0.4
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.1
+0.4
+0.4
+0.2
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