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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16497 and 16498 are separated by 242 nucleotides
16498 and 16499 are separated by 438 nucleotides
16499 and 16500 are separated by 309 nucleotides
16500 and 16501 are separated by 458 nucleotides
mRNA_8129: 16497 - KOG0543 FKBP-type peptidyl-prolyl cis-trans isomerase, at 487,427 to 488,552
16497
mRNA_8130: 16498 - BLAST transcription factor [Pseudozyma hubeiensis SY62], at 488,795 to 491,438
16498
mRNA_8131: 16499 - KOG2431 1, 2-alpha-mannosidase, at 491,877 to 495,566
16499
mRNA_8132: 16500 - SUPERFAMILY--SSF52047, at 495,876 to 497,390
16500
mRNA_8133: 16501 - HMMPfam-Senescence-associated protein-PF06911, at 497,849 to 499,471
16501
Group
Condition
mRNA
_8129
mRNA
_8130
mRNA
_8131
mRNA
_8132
mRNA
_8133
16497
16498
16499
16500
16501
growth on oleic acid
YNB Glucose
-0.4
+0.0
+0.2
-0.3
-0.7
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.1
-0.3
-0.4
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
+0.5
-0.2
+0.1
-0.5
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
-0.5
-0.0
-0.5
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.3
-0.1
+0.0
+0.0
growth on oleic acid
YNB Oleic Acid
-0.3
+0.4
+0.3
-0.5
-0.3
auxotrophy
YNB Glucose
-0.3
+0.3
-0.2
-0.3
+0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.6
-0.2
+0.0
+0.7
auxotrophy
Dropout Complete
+0.4
-0.3
-0.2
-0.4
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
+1.2
-0.1
-0.3
-0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.5
-0.2
-0.4
+0.3
growth on ricinoleic acid
YNB Glucose
-0.4
+0.8
+0.0
-0.0
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.2
-0.1
+0.4
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.4
+0.4
+0.2
-0.3
growth on ypd
YPD
+0.4
-0.1
+0.5
-0.1
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.9
+0.2
+0.2
+1.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+0.2
+0.4
-0.1
+0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
+0.6
-0.2
-0.1
+0.8
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.6
+0.1
+0.1
+1.2
ypd buoyancy
40 hrs Median Buoyancy
-0.3
+0.4
+0.0
+0.2
+1.8
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.5
+0.6
+0.4
+1.5
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