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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16499 and 16500 are separated by 309 nucleotides
16500 and 16501 are separated by 458 nucleotides
16501 and 16502 are separated by 244 nucleotides
16502 and 16503 are separated by 136 nucleotides
mRNA_8131: 16499 - KOG2431 1, 2-alpha-mannosidase, at 491,877 to 495,566
16499
mRNA_8132: 16500 - SUPERFAMILY--SSF52047, at 495,876 to 497,390
16500
mRNA_8133: 16501 - HMMPfam-Senescence-associated protein-PF06911, at 497,849 to 499,471
16501
mRNA_8134: 16502 - K17891 ERV2 FAD-linked sulfhydryl oxidase, at 499,716 to 500,735
16502
mRNA_8135: 16503 - K00804 GGPS1 geranylgeranyl diphosphate synthase, type III, at 500,872 to 502,376
16503
Group
Condition
mRNA
_8131
mRNA
_8132
mRNA
_8133
mRNA
_8134
mRNA
_8135
16499
16500
16501
16502
16503
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
-0.5
+0.1
-0.3
-3.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.0
+0.7
+0.1
-3.6
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.0
+0.0
+0.1
-2.9
growth on oleic acid
YNB Glucose
+0.2
-0.3
-0.7
-0.3
-1.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
+0.1
-0.5
-0.3
-1.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.3
-0.4
-0.3
-0.6
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.4
+0.3
+0.5
-1.9
growth on oleic acid
YNB Oleic Acid
+0.3
-0.5
-0.3
+0.1
-1.0
auxotrophy
YNB Glucose
-0.2
-0.3
+0.4
+0.4
-1.7
auxotrophy
Dropout Complete
-0.2
-0.4
+0.3
+0.2
-1.3
growth on ypd
YPD
+0.5
-0.1
-0.0
+0.0
-1.7
auxotrophy
YNB Glucose 75mM Arginine
-0.3
-0.4
+0.2
+0.5
-1.1
growth on ricinoleic acid
YNB Glucose
+0.0
-0.0
+0.0
-0.1
-0.8
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
+0.2
-0.3
+0.3
-0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.1
+0.8
-0.0
-0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.4
+0.2
+0.4
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
-0.1
+0.5
+0.2
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.2
+1.8
+0.2
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.1
+1.2
+0.3
+0.9
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
+0.2
+1.4
-0.5
+1.6
ypd buoyancy
40 hrs High Buoyancy
+0.6
+0.4
+1.5
+0.3
+0.6
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