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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16509 and 16510 are separated by 526 nucleotides
16510 and 16511 are separated by 360 nucleotides
16511 and 16512 are separated by 146 nucleotides
16512 and 16513 are separated by 134 nucleotides
mRNA_8141: 16509 - Hypothetical Protein, at 511,891 to 512,782
16509
mRNA_8142: 16510 - K06910 K06910 uncharacterized protein, at 513,309 to 514,169
16510
mRNA_8143: 16511 - K01515 nudF ADP-ribose pyrophosphatase, at 514,530 to 515,609
16511
mRNA_8144: 16512 - HMMPfam-Domain of unknown function (DUF3506)-PF12014,HMMPfam-F-box-like-PF12937,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383, at 515,756 to 518,130
16512
mRNA_8145: 16513 - K15304 RANBP3 Ran-binding protein 3, at 518,265 to 522,947
16513
Group
Condition
mRNA
_8141
mRNA
_8142
mRNA
_8143
mRNA
_8144
mRNA
_8145
16509
16510
16511
16512
16513
ypd buoyancy
40 hrs No Buoyancy Separation
-1.8
+0.7
-0.6
-0.2
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.8
-0.6
+0.1
-0.4
+0.0
auxotrophy
YNB Glucose
-1.0
+0.0
+0.1
-0.6
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.6
-0.1
-0.2
-0.4
-0.1
auxotrophy
Dropout Complete
-0.3
-0.2
-0.0
-0.3
-0.1
growth on ricinoleic acid
YNB Glucose
-0.8
-0.2
+0.2
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
-0.4
+0.0
-0.0
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-0.6
-0.3
+0.1
+0.1
growth on oleic acid
YNB Oleic Acid
-0.7
-0.1
+0.5
+0.0
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.3
+0.0
+0.1
-0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
+0.5
+0.1
+0.0
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.4
-0.0
-0.1
-0.1
growth on oleic acid
YNB Glucose
+0.1
+0.0
+0.2
-0.4
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.1
+0.3
-0.2
+0.1
growth on ypd
YPD
+0.2
+0.5
-0.0
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
-0.2
-0.1
-0.0
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
-0.1
+0.6
+0.3
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
+0.3
+0.4
-0.0
+0.3
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.6
-0.1
+0.1
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.4
+0.0
+0.3
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.1
+0.4
+0.3
+0.1
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