Fitness for 5 genes in Rhodosporidium toruloides IFO0880

Add gene:

Number of genes on each side:  

Top 21 experiments (either direction), sorted by average fitness

Or view all 21 experiments or choose conditions or try the comparative fitness browser

500 nt 16511 and 16512 are separated by 146 nucleotides16512 and 16513 are separated by 134 nucleotides16513 and 16514 are separated by 208 nucleotides16514 and 16515 are separated by 281 nucleotides mRNA_8143: 16511 - K01515 nudF ADP-ribose pyrophosphatase, at 514,530 to 515,609 16511 mRNA_8144: 16512 - HMMPfam-Domain of unknown function (DUF3506)-PF12014,HMMPfam-F-box-like-PF12937,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383, at 515,756 to 518,130 16512 mRNA_8145: 16513 - K15304 RANBP3 Ran-binding protein 3, at 518,265 to 522,947 16513 mRNA_8146: 16514 - HMMPfam-PH domain-PF00169,ProSiteProfiles-PH domain profile.-PS50003,SMART-Pleckstrin homology domain.-SM00233,SUPERFAMILY--SSF50729,SUPERFAMILY--SSF55753, at 523,156 to 525,295 16514 mRNA_8147: 16515 - HMMPfam-Enoyl-CoA hydratase/isomerase family-PF00378,SUPERFAMILY--SSF52096, at 525,577 to 526,736 16515
Group Condition mRNA_8143 mRNA_8144 mRNA_8145 mRNA_8146 mRNA_8147
16511 16512 16513 16514 16515
auxotrophy YNB Glucose 75mM Arginine -0.2 -0.4 -0.1 -0.9 +0.1
auxotrophy YNB Glucose +0.1 -0.6 -0.1 -0.7 -0.0
facs on lipid accumulation Sorted Low BODIPY Gate +0.1 +0.0 -0.2 -0.6 -0.2
ypd buoyancy 40 hrs High Buoyancy -0.1 +0.1 -0.1 -0.4 -0.2
auxotrophy YNB Glucose 75mM Methionine +0.1 -0.4 +0.0 -0.1 -0.3
facs on lipid accumulation Sorted No BODIPY Gate +0.4 +0.3 +0.1 -0.8 -0.5
growth on oleic acid YNB Glucose +0.2 -0.4 +0.1 -0.1 -0.2
growth on ricinoleic acid YNB Glucose +0.2 +0.1 +0.0 -0.8 +0.2
ypd buoyancy 40 hrs Median Buoyancy -0.0 -0.1 -0.1 +0.0 -0.1
ypd buoyancy 40 hrs Low Buoyancy +0.0 +0.1 -0.5 -0.1 +0.2
ypd buoyancy 40 hrs No Buoyancy Separation -0.6 -0.2 +0.1 +0.4 +0.1
growth on oleic acid YNB Oleic Acid +0.5 +0.0 +0.1 -0.6 -0.1
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.3 +0.1 +0.1 +0.3 -0.2
growth on ricinoleic acid YNB Ricinoleic Acid +0.6 +0.3 -0.3 -0.9 +0.4
facs on lipid accumulation Sorted High BODIPY Gate +0.0 +0.3 -0.0 -0.3 +0.1
auxotrophy Dropout Complete -0.0 -0.3 -0.1 +0.6 -0.1
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.1 -0.0 +0.2 +0.6 -0.4
growth on ricinoleic acid YNB Methylricinoleic Acid +0.4 -0.0 +0.3 +0.0 -0.1
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.3 -0.2 +0.1 +0.7 -0.3
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.0 -0.0 +0.2 +0.6 -0.1
growth on ypd YPD -0.0 -0.1 -0.2 +0.7 +0.3
remove
mRNA_8143
plot
remove
mRNA_8144
plot
remove
mRNA_8145
remove
mRNA_8146
plot
remove
mRNA_8147
plot