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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16512 and 16513 are separated by 134 nucleotides
16513 and 16514 are separated by 208 nucleotides
16514 and 16515 are separated by 281 nucleotides
16515 and 16516 are separated by 321 nucleotides
mRNA_8144: 16512 - HMMPfam-Domain of unknown function (DUF3506)-PF12014,HMMPfam-F-box-like-PF12937,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383, at 515,756 to 518,130
16512
mRNA_8145: 16513 - K15304 RANBP3 Ran-binding protein 3, at 518,265 to 522,947
16513
mRNA_8146: 16514 - HMMPfam-PH domain-PF00169,ProSiteProfiles-PH domain profile.-PS50003,SMART-Pleckstrin homology domain.-SM00233,SUPERFAMILY--SSF50729,SUPERFAMILY--SSF55753, at 523,156 to 525,295
16514
mRNA_8147: 16515 - HMMPfam-Enoyl-CoA hydratase/isomerase family-PF00378,SUPERFAMILY--SSF52096, at 525,577 to 526,736
16515
mRNA_8148: 16516 - HMMPfam-START domain-PF01852,ProSiteProfiles-START domain profile.-PS50848,SUPERFAMILY--SSF55961, at 527,058 to 528,382
16516
Group
Condition
mRNA
_8144
mRNA
_8145
mRNA
_8146
mRNA
_8147
mRNA
_8148
16512
16513
16514
16515
16516
growth on ricinoleic acid
YNB Glucose
+0.1
+0.0
-0.8
+0.2
-1.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
+0.1
-0.8
-0.5
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
-0.3
-0.9
+0.4
-0.6
auxotrophy
YNB Glucose 75mM Arginine
-0.4
-0.1
-0.9
+0.1
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
+0.1
+0.4
+0.1
-1.4
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.1
-0.4
-0.2
-0.3
auxotrophy
YNB Glucose
-0.6
-0.1
-0.7
-0.0
+0.8
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
+0.3
+0.0
-0.1
-0.5
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.1
+0.0
-0.1
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.5
-0.1
+0.2
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
-0.2
-0.6
-0.2
+0.8
growth on oleic acid
YNB Glucose
-0.4
+0.1
-0.1
-0.2
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
+0.2
+0.6
-0.4
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
+0.1
+0.7
-0.3
-0.0
growth on oleic acid
YNB Oleic Acid
+0.0
+0.1
-0.6
-0.1
+0.9
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.1
+0.3
-0.2
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
-0.0
-0.3
+0.1
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.2
+0.6
-0.1
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.4
+0.0
-0.1
-0.3
+1.2
growth on ypd
YPD
-0.1
-0.2
+0.7
+0.3
-0.3
auxotrophy
Dropout Complete
-0.3
-0.1
+0.6
-0.1
+0.9
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