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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16514 and 16515 are separated by 281 nucleotides
16515 and 16516 are separated by 321 nucleotides
16516 and 16517 are separated by 547 nucleotides
16517 and 16518 are separated by 160 nucleotides
mRNA_8146: 16514 - HMMPfam-PH domain-PF00169,ProSiteProfiles-PH domain profile.-PS50003,SMART-Pleckstrin homology domain.-SM00233,SUPERFAMILY--SSF50729,SUPERFAMILY--SSF55753, at 523,156 to 525,295
16514
mRNA_8147: 16515 - HMMPfam-Enoyl-CoA hydratase/isomerase family-PF00378,SUPERFAMILY--SSF52096, at 525,577 to 526,736
16515
mRNA_8148: 16516 - HMMPfam-START domain-PF01852,ProSiteProfiles-START domain profile.-PS50848,SUPERFAMILY--SSF55961, at 527,058 to 528,382
16516
mRNA_8149: 16517 - KOG1198 Zinc-binding oxidoreductase, at 528,930 to 530,418
16517
mRNA_8150: 16518 - K11135 PINX1 Pin2-interacting protein X1, at 530,579 to 532,165
16518
Group
Condition
mRNA
_8146
mRNA
_8147
mRNA
_8148
mRNA
_8149
mRNA
_8150
16514
16515
16516
16517
16518
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
+0.1
-1.4
-0.6
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.9
+0.4
-0.6
-0.0
N.D.
growth on ricinoleic acid
YNB Glucose
-0.8
+0.2
-1.0
+0.5
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.8
-0.5
-0.4
+0.6
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.6
-0.4
-0.2
-0.8
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.4
-0.2
-0.3
+0.2
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.1
-0.1
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.6
-0.1
-0.3
-0.7
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
-0.2
+0.8
-0.4
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.9
+0.1
+0.3
+0.0
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.2
+0.0
-0.4
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
+0.1
+0.3
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-0.2
+0.1
-0.2
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
-0.1
-0.5
+0.7
N.D.
auxotrophy
YNB Glucose
-0.7
-0.0
+0.8
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.7
-0.3
-0.0
+0.1
N.D.
growth on oleic acid
YNB Glucose
-0.1
-0.2
+0.3
+0.6
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.3
+1.2
+0.1
N.D.
growth on ypd
YPD
+0.7
+0.3
-0.3
+0.2
N.D.
growth on oleic acid
YNB Oleic Acid
-0.6
-0.1
+0.9
+0.8
N.D.
auxotrophy
Dropout Complete
+0.6
-0.1
+0.9
+0.3
N.D.
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