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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16516 and 16517 are separated by 547 nucleotides
16517 and 16518 are separated by 160 nucleotides
16518 and 16519 are separated by 432 nucleotides
16519 and 16520 are separated by 152 nucleotides
mRNA_8148: 16516 - HMMPfam-START domain-PF01852,ProSiteProfiles-START domain profile.-PS50848,SUPERFAMILY--SSF55961, at 527,058 to 528,382
16516
mRNA_8149: 16517 - KOG1198 Zinc-binding oxidoreductase, at 528,930 to 530,418
16517
mRNA_8150: 16518 - K11135 PINX1 Pin2-interacting protein X1, at 530,579 to 532,165
16518
mRNA_8151: 16519 - K19846 SPA2 protein SPA2, at 532,598 to 536,503
16519
mRNA_8152: 16520 - KOG2944 Glyoxalase, at 536,656 to 537,504
16520
Group
Condition
mRNA
_8148
mRNA
_8149
mRNA
_8150
mRNA
_8151
mRNA
_8152
16516
16517
16518
16519
16520
ypd buoyancy
40 hrs No Buoyancy Separation
-1.4
-0.6
N.D.
-0.9
-2.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
-0.7
N.D.
-0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.3
N.D.
-0.0
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.8
N.D.
+0.0
+0.5
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.2
N.D.
+0.2
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
+0.1
N.D.
-0.2
-0.2
growth on ricinoleic acid
YNB Glucose
-1.0
+0.5
N.D.
+0.6
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.4
N.D.
+0.4
+0.0
growth on ypd
YPD
-0.3
+0.2
N.D.
+0.1
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.8
-0.4
N.D.
+0.3
-0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.2
N.D.
+0.0
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.6
-0.0
N.D.
+1.3
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.3
+0.0
N.D.
+0.6
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
-0.3
N.D.
+0.3
+0.8
growth on oleic acid
YNB Glucose
+0.3
+0.6
N.D.
+0.6
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
+0.7
N.D.
+1.2
+0.1
auxotrophy
YNB Glucose
+0.8
+0.1
N.D.
+0.7
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+1.2
+0.1
N.D.
+0.7
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
+0.6
N.D.
+0.5
+1.1
auxotrophy
Dropout Complete
+0.9
+0.3
N.D.
+0.6
+0.1
growth on oleic acid
YNB Oleic Acid
+0.9
+0.8
N.D.
+0.7
+0.2
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