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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16518 and 16519 are separated by 432 nucleotides
16519 and 16520 are separated by 152 nucleotides
16520 and 16521 are separated by 187 nucleotides
16521 and 16522 are separated by 133 nucleotides
mRNA_8150: 16518 - K11135 PINX1 Pin2-interacting protein X1, at 530,579 to 532,165
16518
mRNA_8151: 16519 - K19846 SPA2 protein SPA2, at 532,598 to 536,503
16519
mRNA_8152: 16520 - KOG2944 Glyoxalase, at 536,656 to 537,504
16520
mRNA_8153: 16521 - HMMPfam-Chalcone-flavanone isomerase-PF02431,SUPERFAMILY--SSF54626, at 537,692 to 539,063
16521
mRNA_8154: 16522 - HMMPfam-Ketopantoate reductase PanE/ApbA-PF02558,HMMPfam-Ketopantoate reductase PanE/ApbA C terminal-PF08546,SUPERFAMILY--SSF48179, at 539,197 to 540,895
16522
Group
Condition
mRNA
_8150
mRNA
_8151
mRNA
_8152
mRNA
_8153
mRNA
_8154
16518
16519
16520
16521
16522
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.9
-2.0
-0.0
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.2
-0.2
-0.4
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.1
-0.1
-0.3
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.3
-0.5
+0.0
-0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.0
-0.1
-0.1
+0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.2
-0.4
+0.3
+0.1
growth on ricinoleic acid
YNB Glucose
N.D.
+0.6
-0.1
-0.3
+0.0
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.6
-0.3
-0.1
+0.1
growth on ypd
YPD
N.D.
+0.1
+0.1
+0.2
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.0
+0.3
-0.0
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.0
+0.5
+0.1
-0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.4
+0.0
+0.0
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+1.3
-0.2
-0.3
-0.2
auxotrophy
Dropout Complete
N.D.
+0.6
+0.1
+0.1
-0.1
auxotrophy
YNB Glucose
N.D.
+0.7
+0.1
-0.1
+0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.7
-0.2
+0.1
+0.1
growth on oleic acid
YNB Glucose
N.D.
+0.6
+0.0
+0.1
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.3
+0.8
+0.2
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+1.2
+0.1
-0.3
+0.0
growth on oleic acid
YNB Oleic Acid
N.D.
+0.7
+0.2
+0.1
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.5
+1.1
+0.0
-0.2
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