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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16520 and 16521 are separated by 187 nucleotides
16521 and 16522 are separated by 133 nucleotides
16522 and 16523 are separated by 214 nucleotides
16523 and 16524 are separated by 600 nucleotides
mRNA_8152: 16520 - KOG2944 Glyoxalase, at 536,656 to 537,504
16520
mRNA_8153: 16521 - HMMPfam-Chalcone-flavanone isomerase-PF02431,SUPERFAMILY--SSF54626, at 537,692 to 539,063
16521
mRNA_8154: 16522 - HMMPfam-Ketopantoate reductase PanE/ApbA-PF02558,HMMPfam-Ketopantoate reductase PanE/ApbA C terminal-PF08546,SUPERFAMILY--SSF48179, at 539,197 to 540,895
16522
mRNA_8155: 16523 - K15361 WDR48, UAF1 WD repeat-containing protein 48, at 541,110 to 545,271
16523
mRNA_8156: 16524 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 545,872 to 548,769
16524
Group
Condition
mRNA
_8152
mRNA
_8153
mRNA
_8154
mRNA
_8155
mRNA
_8156
16520
16521
16522
16523
16524
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.4
-0.1
-0.6
-1.3
auxotrophy
YNB Glucose
+0.1
-0.1
+0.1
-0.9
-1.3
growth on ricinoleic acid
YNB Glucose
-0.1
-0.3
+0.0
-0.8
-0.9
auxotrophy
YNB Glucose 75mM Arginine
-0.3
-0.1
+0.1
-0.7
-0.7
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.1
+0.1
-0.5
-1.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.5
+0.0
-0.2
+1.5
-2.2
ypd buoyancy
40 hrs No Buoyancy Separation
-2.0
-0.0
+0.1
+0.2
+0.3
auxotrophy
Dropout Complete
+0.1
+0.1
-0.1
-0.4
-0.8
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.3
+0.0
-0.5
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.3
-0.2
-0.4
+0.1
growth on oleic acid
YNB Glucose
+0.0
+0.1
+0.3
-0.4
-0.7
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-0.0
+0.1
+0.3
-1.1
growth on oleic acid
YNB Oleic Acid
+0.2
+0.1
+0.1
-0.6
-0.3
ypd buoyancy
40 hrs High Buoyancy
-0.4
+0.3
+0.1
+0.1
-0.3
growth on ypd
YPD
+0.1
+0.2
+0.0
-0.5
+0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.1
+0.1
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.3
-0.1
+0.3
+0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.0
+0.1
+0.0
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+1.1
+0.0
-0.2
+0.4
-0.7
facs on lipid accumulation
Sorted High BODIPY Gate
+0.8
+0.2
-0.3
+0.5
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
+0.1
-0.1
+0.6
+1.8
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