Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 16521 and 16522 are separated by 133 nucleotides16522 and 16523 are separated by 214 nucleotides16523 and 16524 are separated by 600 nucleotides16524 and 16525 are separated by 887 nucleotides mRNA_8153: 16521 - HMMPfam-Chalcone-flavanone isomerase-PF02431,SUPERFAMILY--SSF54626, at 537,692 to 539,063 16521 mRNA_8154: 16522 - HMMPfam-Ketopantoate reductase PanE/ApbA-PF02558,HMMPfam-Ketopantoate reductase PanE/ApbA C terminal-PF08546,SUPERFAMILY--SSF48179, at 539,197 to 540,895 16522 mRNA_8155: 16523 - K15361 WDR48, UAF1 WD repeat-containing protein 48, at 541,110 to 545,271 16523 mRNA_8156: 16524 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 545,872 to 548,769 16524 mRNA_8157: 16525 - ProSiteProfiles-DOMON domain profile.-PS50836,ProSiteProfiles-Cytochrome b561 domain profile.-PS50939,SMART-Cytochrome b-561 / ferric reductase transmembrane domain.-SM00665,SUPERFAMILY--SSF49344, at 549,657 to 551,853 16525
Group Condition mRNA_8153 mRNA_8154 mRNA_8155 mRNA_8156 mRNA_8157
16521 16522 16523 16524 16525
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.4 -0.1 -0.6 -1.3 -0.2
auxotrophy YNB Glucose -0.1 +0.1 -0.9 -1.3 -0.1
growth on ricinoleic acid YNB Glucose -0.3 +0.0 -0.8 -0.9 -0.0
auxotrophy YNB Glucose 75mM Arginine -0.1 +0.1 -0.7 -0.7 -0.1
facs on lipid accumulation Sorted Low BODIPY Gate +0.0 -0.2 +1.5 -2.2 -0.5
auxotrophy Dropout Complete +0.1 -0.1 -0.4 -0.8 -0.0
auxotrophy YNB Glucose 75mM Methionine +0.1 +0.1 -0.5 -1.0 +0.0
growth on ricinoleic acid YNB Methylricinoleic Acid -0.3 +0.0 -0.5 -0.4 +0.1
growth on ricinoleic acid YNB Ricinoleic Acid -0.3 -0.2 -0.4 +0.1 +0.1
growth on oleic acid YNB Glucose +0.1 +0.3 -0.4 -0.7 +0.0
growth on oleic acid YNB Oleic Acid +0.1 +0.1 -0.6 -0.3 +0.0
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.0 +0.1 +0.3 -1.1 +0.2
facs on lipid accumulation Sorted No BODIPY Gate +0.0 -0.2 +0.4 -0.7 +0.1
growth on ypd YPD +0.2 +0.0 -0.5 +0.0 +0.1
ypd buoyancy 40 hrs High Buoyancy +0.3 +0.1 +0.1 -0.3 -0.0
facs on lipid accumulation Sorted High BODIPY Gate +0.2 -0.3 +0.5 -0.3 +0.1
ypd buoyancy 40 hrs Median Buoyancy -0.1 +0.1 +0.1 +0.1 +0.0
ypd buoyancy 40 hrs Low Buoyancy +0.0 +0.1 +0.0 +0.2 -0.0
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.3 -0.1 +0.3 +0.4 +0.1
ypd buoyancy 40 hrs No Buoyancy Separation -0.0 +0.1 +0.2 +0.3 -0.2
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.1 -0.1 +0.6 +1.8 +0.2
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