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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16521 and 16522 are separated by 133 nucleotides
16522 and 16523 are separated by 214 nucleotides
16523 and 16524 are separated by 600 nucleotides
16524 and 16525 are separated by 887 nucleotides
mRNA_8153: 16521 - HMMPfam-Chalcone-flavanone isomerase-PF02431,SUPERFAMILY--SSF54626, at 537,692 to 539,063
16521
mRNA_8154: 16522 - HMMPfam-Ketopantoate reductase PanE/ApbA-PF02558,HMMPfam-Ketopantoate reductase PanE/ApbA C terminal-PF08546,SUPERFAMILY--SSF48179, at 539,197 to 540,895
16522
mRNA_8155: 16523 - K15361 WDR48, UAF1 WD repeat-containing protein 48, at 541,110 to 545,271
16523
mRNA_8156: 16524 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 545,872 to 548,769
16524
mRNA_8157: 16525 - ProSiteProfiles-DOMON domain profile.-PS50836,ProSiteProfiles-Cytochrome b561 domain profile.-PS50939,SMART-Cytochrome b-561 / ferric reductase transmembrane domain.-SM00665,SUPERFAMILY--SSF49344, at 549,657 to 551,853
16525
Group
Condition
mRNA
_8153
mRNA
_8154
mRNA
_8155
mRNA
_8156
mRNA
_8157
16521
16522
16523
16524
16525
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
-0.1
-0.6
-1.3
-0.2
auxotrophy
YNB Glucose
-0.1
+0.1
-0.9
-1.3
-0.1
growth on ricinoleic acid
YNB Glucose
-0.3
+0.0
-0.8
-0.9
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.1
-0.7
-0.7
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
-0.2
+1.5
-2.2
-0.5
auxotrophy
Dropout Complete
+0.1
-0.1
-0.4
-0.8
-0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.1
-0.5
-1.0
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
+0.0
-0.5
-0.4
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
-0.2
-0.4
+0.1
+0.1
growth on oleic acid
YNB Glucose
+0.1
+0.3
-0.4
-0.7
+0.0
growth on oleic acid
YNB Oleic Acid
+0.1
+0.1
-0.6
-0.3
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
+0.1
+0.3
-1.1
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
-0.2
+0.4
-0.7
+0.1
growth on ypd
YPD
+0.2
+0.0
-0.5
+0.0
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.3
+0.1
+0.1
-0.3
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.3
+0.5
-0.3
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.1
+0.1
+0.1
+0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.1
+0.0
+0.2
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
-0.1
+0.3
+0.4
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
+0.1
+0.2
+0.3
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.1
+0.6
+1.8
+0.2
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