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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16523 and 16524 are separated by 600 nucleotides
16524 and 16525 are separated by 887 nucleotides
16525 and 16526 are separated by 192 nucleotides
16526 and 16527 are separated by 185 nucleotides
mRNA_8155: 16523 - K15361 WDR48, UAF1 WD repeat-containing protein 48, at 541,110 to 545,271
16523
mRNA_8156: 16524 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 545,872 to 548,769
16524
mRNA_8157: 16525 - ProSiteProfiles-DOMON domain profile.-PS50836,ProSiteProfiles-Cytochrome b561 domain profile.-PS50939,SMART-Cytochrome b-561 / ferric reductase transmembrane domain.-SM00665,SUPERFAMILY--SSF49344, at 549,657 to 551,853
16525
mRNA_8158: 16526 - K14004 SEC13 protein transport protein SEC13, at 552,046 to 553,498
16526
mRNA_8159: 16527 - K17607 TIPRL, TIP41 type 2A phosphatase activator TIP41, at 553,684 to 555,009
16527
Group
Condition
mRNA
_8155
mRNA
_8156
mRNA
_8157
mRNA
_8158
mRNA
_8159
16523
16524
16525
16526
16527
facs on lipid accumulation
Sorted Low BODIPY Gate
+1.5
-2.2
-0.5
N.D.
-1.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.6
-1.3
-0.2
N.D.
-0.2
growth on ricinoleic acid
YNB Glucose
-0.8
-0.9
-0.0
N.D.
+0.6
auxotrophy
YNB Glucose
-0.9
-1.3
-0.1
N.D.
+1.2
auxotrophy
YNB Glucose 75mM Arginine
-0.7
-0.7
-0.1
N.D.
+0.7
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-1.1
+0.2
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.5
-1.0
+0.0
N.D.
+0.9
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
-0.4
+0.1
N.D.
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
-0.7
+0.1
N.D.
-0.1
growth on oleic acid
YNB Glucose
-0.4
-0.7
+0.0
N.D.
+0.9
auxotrophy
Dropout Complete
-0.4
-0.8
-0.0
N.D.
+1.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.5
-0.3
+0.1
N.D.
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
+0.3
-0.2
N.D.
-0.3
growth on ypd
YPD
-0.5
+0.0
+0.1
N.D.
+0.5
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.3
-0.0
N.D.
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.2
-0.0
N.D.
-0.0
growth on oleic acid
YNB Oleic Acid
-0.6
-0.3
+0.0
N.D.
+1.1
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.1
+0.0
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
+0.4
+0.1
N.D.
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
+0.1
+0.1
N.D.
+1.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.6
+1.8
+0.2
N.D.
+0.3
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