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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16527 and 16528 are separated by 134 nucleotides
16528 and 16529 are separated by 179 nucleotides
16529 and 16530 are separated by 166 nucleotides
16530 and 16531 are separated by 131 nucleotides
mRNA_8159: 16527 - K17607 TIPRL, TIP41 type 2A phosphatase activator TIP41, at 553,684 to 555,009
16527
mRNA_8160: 16528 - K01873 VARS, valS valyl-tRNA synthetase, at 555,144 to 559,347
16528
mRNA_8161: 16529 - BLAST Actin cytoskeleton-regulatory complex protein pan1 [R..., at 559,527 to 560,747
16529
mRNA_8162: 16530 - K01288 KEX1 carboxypeptidase D, at 560,914 to 563,494
16530
mRNA_8163: 16531 - HMMPfam-Domain of unknown function (DUF4505)-PF14956, at 563,626 to 564,400
16531
Group
Condition
mRNA
_8159
mRNA
_8160
mRNA
_8161
mRNA
_8162
mRNA
_8163
16527
16528
16529
16530
16531
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.3
N.D.
+0.4
-0.1
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
N.D.
-0.2
+0.3
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
N.D.
+0.1
-0.4
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
N.D.
-0.3
-0.3
+0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.0
N.D.
-0.2
-0.0
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
N.D.
-0.0
-0.2
+0.3
growth on ricinoleic acid
YNB Glucose
+0.6
N.D.
+0.0
-0.1
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
N.D.
+0.2
+0.0
-0.6
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
N.D.
+0.1
-0.0
+0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
N.D.
+0.0
-0.1
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.3
N.D.
+0.1
-0.1
+0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.3
N.D.
+0.0
+0.0
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
N.D.
+0.2
-0.0
+0.5
auxotrophy
YNB Glucose 75mM Arginine
+0.7
N.D.
+0.4
-0.3
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+1.0
N.D.
-0.0
+0.0
-0.5
growth on ypd
YPD
+0.5
N.D.
+0.2
-0.0
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.9
N.D.
+0.5
-0.3
-0.1
auxotrophy
YNB Glucose
+1.2
N.D.
+0.4
-0.3
-0.0
growth on oleic acid
YNB Glucose
+0.9
N.D.
+0.2
-0.0
+0.2
growth on oleic acid
YNB Oleic Acid
+1.1
N.D.
+0.2
+0.1
+0.1
auxotrophy
Dropout Complete
+1.1
N.D.
+0.8
-0.1
+0.2
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