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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16528 and 16529 are separated by 179 nucleotides
16529 and 16530 are separated by 166 nucleotides
16530 and 16531 are separated by 131 nucleotides
16531 and 16532 are separated by 215 nucleotides
mRNA_8160: 16528 - K01873 VARS, valS valyl-tRNA synthetase, at 555,144 to 559,347
16528
mRNA_8161: 16529 - BLAST Actin cytoskeleton-regulatory complex protein pan1 [R..., at 559,527 to 560,747
16529
mRNA_8162: 16530 - K01288 KEX1 carboxypeptidase D, at 560,914 to 563,494
16530
mRNA_8163: 16531 - HMMPfam-Domain of unknown function (DUF4505)-PF14956, at 563,626 to 564,400
16531
mRNA_8164: 16532 - Hypothetical Protein, at 564,616 to 567,626
16532
Group
Condition
mRNA
_8160
mRNA
_8161
mRNA
_8162
mRNA
_8163
mRNA
_8164
16528
16529
16530
16531
16532
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.1
-0.4
-0.0
-0.4
growth on ricinoleic acid
YNB Glucose
N.D.
+0.0
-0.1
-0.4
+0.4
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.2
+0.3
-0.3
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.0
-0.2
+0.3
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.0
+0.0
-0.5
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.3
-0.3
+0.3
+0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.5
-0.3
-0.1
-0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.2
-0.0
-0.1
+0.3
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.4
-0.3
-0.1
+0.0
auxotrophy
YNB Glucose
N.D.
+0.4
-0.3
-0.0
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.0
-0.1
+0.2
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.4
-0.1
-0.1
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.2
+0.0
-0.6
+0.4
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.1
-0.1
+0.0
+0.0
growth on ypd
YPD
N.D.
+0.2
-0.0
+0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.0
+0.0
+0.2
+0.1
growth on oleic acid
YNB Glucose
N.D.
+0.2
-0.0
+0.2
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.1
-0.0
+0.6
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.2
-0.0
+0.5
+0.1
auxotrophy
Dropout Complete
N.D.
+0.8
-0.1
+0.2
+0.1
growth on oleic acid
YNB Oleic Acid
N.D.
+0.2
+0.1
+0.1
+0.6
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