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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16530 and 16531 are separated by 131 nucleotides
16531 and 16532 are separated by 215 nucleotides
16532 and 16533 are separated by 1777 nucleotides
16533 and 16534 are separated by 309 nucleotides
mRNA_8162: 16530 - K01288 KEX1 carboxypeptidase D, at 560,914 to 563,494
16530
mRNA_8163: 16531 - HMMPfam-Domain of unknown function (DUF4505)-PF14956, at 563,626 to 564,400
16531
mRNA_8164: 16532 - Hypothetical Protein, at 564,616 to 567,626
16532
mRNA_8165: 16533 - HMMPfam-Saccharopine dehydrogenase-PF03435,SUPERFAMILY--SSF51735, at 569,404 to 570,854
16533
mRNA_8166: 16534 - BLAST receptor-activated Ca2+-permeable cation channel [Aur..., at 571,164 to 574,503
16534
Group
Condition
mRNA
_8162
mRNA
_8163
mRNA
_8164
mRNA
_8165
mRNA
_8166
16530
16531
16532
16533
16534
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
-0.3
+0.1
-1.9
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
-0.0
-0.4
-0.6
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.3
-0.1
+0.0
-0.6
+0.1
auxotrophy
YNB Glucose
-0.3
-0.0
-0.1
-0.4
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.3
-0.1
-0.1
-0.2
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
-0.5
+0.3
-0.0
-0.3
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.0
+0.0
-0.3
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
-0.6
+0.4
-0.2
-0.0
growth on ricinoleic acid
YNB Glucose
-0.1
-0.4
+0.4
-0.0
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.2
-0.1
-0.3
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.1
-0.1
-0.1
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
+0.3
-0.3
-0.1
+0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.1
+0.3
-0.0
+0.1
growth on oleic acid
YNB Glucose
-0.0
+0.2
+0.3
-0.4
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
+0.3
+0.2
+0.3
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.2
+0.1
+0.1
+0.0
auxotrophy
Dropout Complete
-0.1
+0.2
+0.1
-0.1
+0.4
growth on oleic acid
YNB Oleic Acid
+0.1
+0.1
+0.6
+0.0
-0.0
growth on ypd
YPD
-0.0
+0.1
-0.1
+0.5
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
+0.6
+0.1
-0.1
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
+0.5
+0.1
+0.3
+0.4
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