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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16533 and 16534 are separated by 309 nucleotides
16534 and 16535 are separated by 168 nucleotides
16535 and 16536 are separated by 1234 nucleotides
16536 and 16537 are separated by 839 nucleotides
mRNA_8165: 16533 - HMMPfam-Saccharopine dehydrogenase-PF03435,SUPERFAMILY--SSF51735, at 569,404 to 570,854
16533
mRNA_8166: 16534 - BLAST receptor-activated Ca2+-permeable cation channel [Aur..., at 571,164 to 574,503
16534
mRNA_8167: 16535 - K04350 RASGRP1 RAS guanyl-releasing protein 1, at 574,672 to 578,875
16535
mRNA_8168: 16536 - BLAST PQ-loop-domain-containing protein [Dichomitus squ..., at 580,110 to 581,600
16536
mRNA_8169: 16537 - HMMPfam-Anaphase-promoting complex, cyclosome, subunit 4-PF12896, at 582,440 to 584,866
16537
Group
Condition
mRNA
_8165
mRNA
_8166
mRNA
_8167
mRNA
_8168
mRNA
_8169
16533
16534
16535
16536
16537
ypd buoyancy
40 hrs No Buoyancy Separation
-1.9
-0.2
-0.0
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.6
-0.1
-0.2
+0.2
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.6
+0.1
+0.1
+0.0
N.D.
auxotrophy
YNB Glucose
-0.4
+0.1
+0.1
-0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.3
-0.1
+0.0
+0.2
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
-0.3
+0.1
+0.1
N.D.
growth on oleic acid
YNB Glucose
-0.4
+0.2
+0.0
+0.1
N.D.
growth on ricinoleic acid
YNB Glucose
-0.0
-0.1
+0.2
-0.1
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.0
+0.2
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
+0.0
+0.0
+0.3
N.D.
growth on oleic acid
YNB Oleic Acid
+0.0
-0.0
+0.0
-0.0
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.0
+0.1
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.3
-0.1
+0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.1
+0.2
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-0.2
-0.1
+0.2
N.D.
auxotrophy
Dropout Complete
-0.1
+0.4
+0.2
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.3
+0.3
+0.1
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.3
+0.3
+0.1
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.3
+0.2
+0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
+0.4
+0.2
+0.3
N.D.
growth on ypd
YPD
+0.5
+0.3
+0.1
+0.3
N.D.
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