Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 16533 and 16534 are separated by 309 nucleotides16534 and 16535 are separated by 168 nucleotides16535 and 16536 are separated by 1234 nucleotides16536 and 16537 are separated by 839 nucleotides mRNA_8165: 16533 - HMMPfam-Saccharopine dehydrogenase-PF03435,SUPERFAMILY--SSF51735, at 569,404 to 570,854 16533 mRNA_8166: 16534 - BLAST receptor-activated Ca2+-permeable cation channel [Aur..., at 571,164 to 574,503 16534 mRNA_8167: 16535 - K04350 RASGRP1 RAS guanyl-releasing protein 1, at 574,672 to 578,875 16535 mRNA_8168: 16536 - BLAST PQ-loop-domain-containing protein [Dichomitus squ..., at 580,110 to 581,600 16536 mRNA_8169: 16537 - HMMPfam-Anaphase-promoting complex, cyclosome, subunit 4-PF12896, at 582,440 to 584,866 16537
Group Condition mRNA_8165 mRNA_8166 mRNA_8167 mRNA_8168 mRNA_8169
16533 16534 16535 16536 16537
ypd buoyancy 40 hrs No Buoyancy Separation -1.9 -0.2 -0.0 -0.3 N.D.
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.6 -0.1 -0.2 +0.2 N.D.
auxotrophy YNB Glucose 75mM Arginine -0.6 +0.1 +0.1 +0.0 N.D.
auxotrophy YNB Glucose -0.4 +0.1 +0.1 -0.1 N.D.
ypd buoyancy 40 hrs High Buoyancy -0.3 -0.1 +0.0 +0.2 N.D.
growth on ricinoleic acid YNB Ricinoleic Acid -0.0 -0.3 +0.1 +0.1 N.D.
growth on oleic acid YNB Glucose -0.4 +0.2 +0.0 +0.1 N.D.
growth on ricinoleic acid YNB Glucose -0.0 -0.1 +0.2 -0.1 N.D.
growth on ricinoleic acid YNB Methylricinoleic Acid -0.2 -0.0 +0.2 -0.0 N.D.
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.3 +0.0 +0.0 +0.3 N.D.
growth on oleic acid YNB Oleic Acid +0.0 -0.0 +0.0 -0.0 N.D.
ypd buoyancy 40 hrs Median Buoyancy +0.1 +0.0 +0.1 -0.0 N.D.
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.1 +0.3 -0.1 +0.1 N.D.
ypd buoyancy 40 hrs Low Buoyancy -0.0 +0.1 +0.2 -0.0 N.D.
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.3 -0.2 -0.1 +0.2 N.D.
auxotrophy Dropout Complete -0.1 +0.4 +0.2 -0.1 N.D.
auxotrophy YNB Glucose 75mM Methionine -0.2 +0.3 +0.3 +0.1 N.D.
facs on lipid accumulation Sorted Low BODIPY Gate -0.1 +0.3 +0.3 +0.1 N.D.
facs on lipid accumulation Sorted High BODIPY Gate -0.1 +0.3 +0.2 +0.1 N.D.
facs on lipid accumulation Sorted No BODIPY Gate +0.3 +0.4 +0.2 +0.3 N.D.
growth on ypd YPD +0.5 +0.3 +0.1 +0.3 N.D.
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