Fitness Browser
Home
Find Gene
BLAST
Experiments
Organisms
Help
Gene
Fitness
Nearby
Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
Add gene:
Go
Number of genes on each side:
1
2
3
4
5
Go
Top 21 experiments (either direction), sorted by average fitness
Or view
all 21 experiments
or
choose conditions
or try the
comparative fitness browser
500 nt
16534 and 16535 are separated by 168 nucleotides
16535 and 16536 are separated by 1234 nucleotides
16536 and 16537 are separated by 839 nucleotides
16537 and 16538 are separated by 899 nucleotides
mRNA_8166: 16534 - BLAST receptor-activated Ca2+-permeable cation channel [Aur..., at 571,164 to 574,503
16534
mRNA_8167: 16535 - K04350 RASGRP1 RAS guanyl-releasing protein 1, at 574,672 to 578,875
16535
mRNA_8168: 16536 - BLAST PQ-loop-domain-containing protein [Dichomitus squ..., at 580,110 to 581,600
16536
mRNA_8169: 16537 - HMMPfam-Anaphase-promoting complex, cyclosome, subunit 4-PF12896, at 582,440 to 584,866
16537
mRNA_8170: 16538 - BLAST PQ-loop-domain-containing protein [Calocera cornea HH..., at 585,766 to 587,530
16538
Group
Condition
mRNA
_8166
mRNA
_8167
mRNA
_8168
mRNA
_8169
mRNA
_8170
16534
16535
16536
16537
16538
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
-0.0
-0.3
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.1
+0.2
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+0.0
+0.3
N.D.
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.2
+0.2
N.D.
+0.1
growth on oleic acid
YNB Oleic Acid
-0.0
+0.0
-0.0
N.D.
+0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.1
-0.0
N.D.
-0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.2
-0.0
N.D.
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
+0.1
+0.1
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
-0.1
+0.1
N.D.
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.0
+0.2
N.D.
+0.2
growth on oleic acid
YNB Glucose
+0.2
+0.0
+0.1
N.D.
+0.0
auxotrophy
YNB Glucose
+0.1
+0.1
-0.1
N.D.
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.1
+0.0
N.D.
+0.2
growth on ricinoleic acid
YNB Glucose
-0.1
+0.2
-0.1
N.D.
+0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
+0.2
-0.0
N.D.
+0.5
auxotrophy
Dropout Complete
+0.4
+0.2
-0.1
N.D.
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
+0.2
+0.1
N.D.
-0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.3
+0.1
N.D.
+0.2
growth on ypd
YPD
+0.3
+0.1
+0.3
N.D.
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
+0.3
+0.1
N.D.
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
+0.2
+0.3
N.D.
+0.2
remove
mRNA_8166
plot
remove
mRNA_8167
plot
remove
mRNA_8168
remove
mRNA_8169
plot
remove
mRNA_8170
plot