Fitness Browser
Home
Find Gene
BLAST
Experiments
Organisms
Help
Gene
Fitness
Nearby
Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
Add gene:
Go
Number of genes on each side:
1
2
3
4
5
Go
Top 21 experiments (either direction), sorted by average fitness
Or view
all 21 experiments
or
choose conditions
or try the
comparative fitness browser
500 nt
16535 and 16536 are separated by 1234 nucleotides
16536 and 16537 are separated by 839 nucleotides
16537 and 16538 are separated by 899 nucleotides
16538 and 16539 are separated by 125 nucleotides
mRNA_8167: 16535 - K04350 RASGRP1 RAS guanyl-releasing protein 1, at 574,672 to 578,875
16535
mRNA_8168: 16536 - BLAST PQ-loop-domain-containing protein [Dichomitus squ..., at 580,110 to 581,600
16536
mRNA_8169: 16537 - HMMPfam-Anaphase-promoting complex, cyclosome, subunit 4-PF12896, at 582,440 to 584,866
16537
mRNA_8170: 16538 - BLAST PQ-loop-domain-containing protein [Calocera cornea HH..., at 585,766 to 587,530
16538
mRNA_8171: 16539 - HMMPfam-DnaJ domain-PF00226,ProSiteProfiles-dnaJ domain profile.-PS50076,SMART-DnaJ molecular chaperone homology domain-SM00271,SUPERFAMILY--SSF46565, at 587,656 to 589,364
16539
Group
Condition
mRNA
_8167
mRNA
_8168
mRNA
_8169
mRNA
_8170
mRNA
_8171
16535
16536
16537
16538
16539
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.0
N.D.
-0.1
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
-0.3
N.D.
+0.0
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.1
N.D.
-0.1
-0.1
growth on ricinoleic acid
YNB Glucose
+0.2
-0.1
N.D.
+0.5
-0.7
growth on oleic acid
YNB Glucose
+0.0
+0.1
N.D.
+0.0
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.0
N.D.
-0.0
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.1
N.D.
+0.3
-0.2
auxotrophy
YNB Glucose
+0.1
-0.1
N.D.
+0.2
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.2
N.D.
-0.2
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-0.0
N.D.
+0.5
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+0.2
N.D.
+0.1
+0.3
growth on oleic acid
YNB Oleic Acid
+0.0
-0.0
N.D.
+0.0
+0.4
auxotrophy
Dropout Complete
+0.2
-0.1
N.D.
+0.2
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.2
N.D.
+0.2
+0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.0
N.D.
+0.2
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.1
N.D.
+0.2
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
+0.1
N.D.
+0.2
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+0.3
N.D.
-0.4
+0.6
growth on ypd
YPD
+0.1
+0.3
N.D.
+0.0
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.3
N.D.
+0.2
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
+0.1
N.D.
-0.0
+0.8
remove
mRNA_8167
plot
remove
mRNA_8168
plot
remove
mRNA_8169
remove
mRNA_8170
plot
remove
mRNA_8171
plot