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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16536 and 16537 are separated by 839 nucleotides
16537 and 16538 are separated by 899 nucleotides
16538 and 16539 are separated by 125 nucleotides
16539 and 16540 are separated by 1100 nucleotides
mRNA_8168: 16536 - BLAST PQ-loop-domain-containing protein [Dichomitus squ..., at 580,110 to 581,600
16536
mRNA_8169: 16537 - HMMPfam-Anaphase-promoting complex, cyclosome, subunit 4-PF12896, at 582,440 to 584,866
16537
mRNA_8170: 16538 - BLAST PQ-loop-domain-containing protein [Calocera cornea HH..., at 585,766 to 587,530
16538
mRNA_8171: 16539 - HMMPfam-DnaJ domain-PF00226,ProSiteProfiles-dnaJ domain profile.-PS50076,SMART-DnaJ molecular chaperone homology domain-SM00271,SUPERFAMILY--SSF46565, at 587,656 to 589,364
16539
mRNA_8172: 16540 - K17592 SACS sacsin, at 590,465 to 596,519
16540
Group
Condition
mRNA
_8168
mRNA
_8169
mRNA
_8170
mRNA
_8171
mRNA
_8172
16536
16537
16538
16539
16540
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
N.D.
+0.2
-0.0
-0.9
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
N.D.
+0.0
-0.0
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.0
N.D.
-0.1
-0.4
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
N.D.
-0.1
-0.1
+0.0
growth on ricinoleic acid
YNB Glucose
-0.1
N.D.
+0.5
-0.7
+0.2
growth on oleic acid
YNB Glucose
+0.1
N.D.
+0.0
-0.2
+0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.0
N.D.
-0.0
-0.1
+0.1
auxotrophy
YNB Glucose
-0.1
N.D.
+0.2
+0.0
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
N.D.
+0.3
-0.2
+0.1
growth on oleic acid
YNB Oleic Acid
-0.0
N.D.
+0.0
+0.4
-0.1
growth on ypd
YPD
+0.3
N.D.
+0.0
+0.2
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
N.D.
+0.5
-0.3
+0.3
ypd buoyancy
40 hrs High Buoyancy
+0.2
N.D.
+0.2
+0.0
+0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.1
N.D.
+0.2
+0.0
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.0
N.D.
+0.2
+0.1
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
N.D.
+0.2
+0.2
-0.2
auxotrophy
Dropout Complete
-0.1
N.D.
+0.2
+0.2
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
N.D.
-0.4
+0.6
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
N.D.
-0.2
+0.4
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
N.D.
+0.1
+0.3
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
N.D.
-0.0
+0.8
+0.1
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