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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16539 and 16540 are separated by 1100 nucleotides
16540 and 16541 are separated by 237 nucleotides
16541 and 16542 are separated by 1358 nucleotides
16542 and 16543 are separated by 281 nucleotides
mRNA_8171: 16539 - HMMPfam-DnaJ domain-PF00226,ProSiteProfiles-dnaJ domain profile.-PS50076,SMART-DnaJ molecular chaperone homology domain-SM00271,SUPERFAMILY--SSF46565, at 587,656 to 589,364
16539
mRNA_8172: 16540 - K17592 SACS sacsin, at 590,465 to 596,519
16540
mRNA_8173: 16541 - HMMPfam-Glutathione-dependent formaldehyde-activating enzyme-PF04828,SUPERFAMILY--SSF51316, at 596,757 to 597,514
16541
mRNA_8174: 16542 - K00645 fabD [acyl-carrier-protein] S-malonyltransferase, at 598,873 to 600,672
16542
mRNA_8175: 16543 - K15303 AKR7 aflatoxin B1 aldehyde reductase, at 600,954 to 602,417
16543
Group
Condition
mRNA
_8171
mRNA
_8172
mRNA
_8173
mRNA
_8174
mRNA
_8175
16539
16540
16541
16542
16543
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
-0.9
-2.0
-2.4
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.2
-3.1
-0.3
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
-0.1
-1.4
-0.9
N.D.
growth on ypd
YPD
+0.2
-0.2
-0.9
-0.7
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
+0.3
-0.3
-1.1
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
+0.1
+0.1
-1.3
N.D.
growth on ricinoleic acid
YNB Glucose
-0.7
+0.2
-0.2
-0.4
N.D.
auxotrophy
YNB Glucose
+0.0
-0.0
-0.1
-0.4
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.4
+0.1
-0.9
+0.7
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.0
-1.4
+0.9
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.0
-0.3
+0.1
N.D.
growth on oleic acid
YNB Glucose
-0.2
+0.0
+0.4
-0.6
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
+0.2
-0.5
-0.3
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.0
+0.2
+0.1
-0.6
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.1
-0.3
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.6
+0.1
+0.0
-0.4
N.D.
growth on oleic acid
YNB Oleic Acid
+0.4
-0.1
+0.3
-0.2
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.1
-0.4
+0.9
N.D.
auxotrophy
Dropout Complete
+0.2
+0.3
+0.2
-0.0
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.8
+0.1
+0.2
-0.5
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
+0.2
+0.2
+0.2
N.D.
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