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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16543 and 16544 are separated by 295 nucleotides
16544 and 16545 are separated by 261 nucleotides
16545 and 16546 are separated by 128 nucleotides
16546 and 16547 are separated by 1866 nucleotides
mRNA_8175: 16543 - K15303 AKR7 aflatoxin B1 aldehyde reductase, at 600,954 to 602,417
16543
mRNA_8176: 16544 - Interpro DNA replication regulator SLD3, at 602,713 to 604,782
16544
mRNA_8177: 16545 - Hypothetical Protein, at 605,044 to 605,937
16545
mRNA_8178: 16546 - Hypothetical Protein, at 606,066 to 607,018
16546
mRNA_8179: 16547 - K20705 DNMBP, ARHGEF36, TUBA dynamin-binding protein, at 608,885 to 612,908
16547
Group
Condition
mRNA
_8175
mRNA
_8176
mRNA
_8177
mRNA
_8178
mRNA
_8179
16543
16544
16545
16546
16547
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.5
-1.3
-0.7
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
-0.3
-0.5
-0.4
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
-0.1
-0.9
-0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
-0.5
-0.2
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
-0.4
-0.4
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
-0.6
-0.2
-0.1
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
-0.0
-0.8
-0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
-0.8
+0.1
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
-0.2
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.2
-0.7
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
-0.2
+0.0
+0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
+0.3
-0.1
-0.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
-0.0
+0.2
+0.0
growth on oleic acid
YNB Glucose
N.D.
N.D.
+0.4
-0.2
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
+0.4
+0.3
-0.4
auxotrophy
YNB Glucose
N.D.
N.D.
+0.5
+0.2
-0.3
auxotrophy
Dropout Complete
N.D.
N.D.
+0.3
+0.5
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
+0.1
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
+0.4
+0.3
-0.2
growth on ypd
YPD
N.D.
N.D.
+0.2
+0.8
-0.3
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
+0.2
+0.5
-0.1
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