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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16546 and 16547 are separated by 1866 nucleotides
16547 and 16548 are separated by 225 nucleotides
16548 and 16549 are separated by 87 nucleotides
16549 and 16550 are separated by 173 nucleotides
mRNA_8178: 16546 - Hypothetical Protein, at 606,066 to 607,018
16546
mRNA_8179: 16547 - K20705 DNMBP, ARHGEF36, TUBA dynamin-binding protein, at 608,885 to 612,908
16547
mRNA_8180: 16548 - K13127 RNF113A, CWC24 RING finger protein 113A, at 613,134 to 614,430
16548
mRNA_8181: 16549 - KOG1752 Glutaredoxin and related proteins, at 614,518 to 615,150
16549
mRNA_8182: 16550 - Hypothetical Protein, at 615,324 to 615,950
16550
Group
Condition
mRNA
_8178
mRNA
_8179
mRNA
_8180
mRNA
_8181
mRNA
_8182
16546
16547
16548
16549
16550
ypd buoyancy
40 hrs No Buoyancy Separation
-1.3
-0.7
N.D.
-0.6
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
-0.4
N.D.
-0.5
-0.0
growth on oleic acid
YNB Oleic Acid
-0.9
-0.2
N.D.
+0.1
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.1
N.D.
-0.8
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
-0.1
N.D.
-0.7
-0.0
growth on oleic acid
YNB Glucose
-0.2
-0.0
N.D.
-0.5
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.7
-0.0
N.D.
-0.2
+0.1
growth on ricinoleic acid
YNB Glucose
-0.8
-0.1
N.D.
+0.1
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.1
N.D.
-0.3
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
+0.1
N.D.
-0.5
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-0.2
N.D.
-0.4
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.0
N.D.
-0.0
+0.1
auxotrophy
YNB Glucose
+0.2
-0.3
N.D.
-0.0
+0.2
auxotrophy
Dropout Complete
+0.5
-0.4
N.D.
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
-0.4
N.D.
+0.9
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.2
N.D.
+0.5
-0.4
auxotrophy
YNB Glucose 75mM Arginine
+0.5
-0.1
N.D.
+0.1
-0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.0
N.D.
+0.7
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.4
N.D.
+1.5
+0.3
growth on ypd
YPD
+0.8
-0.3
N.D.
+1.1
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.2
N.D.
+1.5
-0.0
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