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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16552 and 16553 are separated by 759 nucleotides
16553 and 16554 are separated by 415 nucleotides
16554 and 16555 are separated by 841 nucleotides
16555 and 16556 are separated by 285 nucleotides
mRNA_8184: 16552 - K00988 APA1_2 ATP adenylyltransferase, at 616,744 to 618,050
16552
mRNA_8185: 16553 - K02359 EGH egghead protein (zeste-white 4 protein), at 618,810 to 622,514
16553
mRNA_8186: 16554 - Hypothetical Protein, at 622,930 to 623,583
16554
mRNA_8187: 16555 - K10949 KDELR ER lumen protein retaining receptor, at 624,425 to 625,437
16555
mRNA_8188: 16556 - K05012 CLCN3_4_5 chloride channel 3/4/5, at 625,723 to 629,622
16556
Group
Condition
mRNA
_8184
mRNA
_8185
mRNA
_8186
mRNA
_8187
mRNA
_8188
16552
16553
16554
16555
16556
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
N.D.
+0.5
N.D.
-1.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
N.D.
+0.5
N.D.
-0.5
growth on oleic acid
YNB Oleic Acid
-0.2
N.D.
+0.0
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
N.D.
-0.1
N.D.
+0.4
growth on ypd
YPD
-0.3
N.D.
+0.3
N.D.
+0.2
ypd buoyancy
40 hrs High Buoyancy
-0.0
N.D.
-0.3
N.D.
+0.6
auxotrophy
YNB Glucose
-0.1
N.D.
+0.2
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
N.D.
+0.2
N.D.
+0.5
auxotrophy
YNB Glucose 75mM Methionine
+0.2
N.D.
+0.1
N.D.
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.1
N.D.
+0.2
N.D.
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.3
N.D.
-0.0
N.D.
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
N.D.
-0.5
N.D.
+0.9
growth on oleic acid
YNB Glucose
+0.2
N.D.
+0.1
N.D.
+0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.2
N.D.
-0.0
N.D.
+0.5
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
N.D.
+0.2
N.D.
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.6
N.D.
-0.5
N.D.
+0.6
auxotrophy
Dropout Complete
+0.2
N.D.
+0.1
N.D.
+0.6
growth on ricinoleic acid
YNB Glucose
+0.0
N.D.
+0.1
N.D.
+0.8
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
N.D.
+0.4
N.D.
+0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.5
N.D.
-0.1
N.D.
+0.8
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
N.D.
+0.3
N.D.
+1.0
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