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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16553 and 16554 are separated by 415 nucleotides
16554 and 16555 are separated by 841 nucleotides
16555 and 16556 are separated by 285 nucleotides
16556 and 16557 are separated by 258 nucleotides
mRNA_8185: 16553 - K02359 EGH egghead protein (zeste-white 4 protein), at 618,810 to 622,514
16553
mRNA_8186: 16554 - Hypothetical Protein, at 622,930 to 623,583
16554
mRNA_8187: 16555 - K10949 KDELR ER lumen protein retaining receptor, at 624,425 to 625,437
16555
mRNA_8188: 16556 - K05012 CLCN3_4_5 chloride channel 3/4/5, at 625,723 to 629,622
16556
mRNA_8189: 16557 - HMMPfam-alpha/beta hydrolase fold-PF07859,SUPERFAMILY--SSF53474, at 629,881 to 631,255
16557
Group
Condition
mRNA
_8185
mRNA
_8186
mRNA
_8187
mRNA
_8188
mRNA
_8189
16553
16554
16555
16556
16557
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.5
N.D.
-1.0
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.5
N.D.
+0.6
-0.7
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.1
N.D.
+0.2
-0.3
growth on oleic acid
YNB Oleic Acid
N.D.
+0.0
N.D.
+0.1
-0.1
auxotrophy
YNB Glucose
N.D.
+0.2
N.D.
+0.3
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.5
N.D.
+0.9
-0.2
auxotrophy
Dropout Complete
N.D.
+0.1
N.D.
+0.6
-0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.1
N.D.
+0.4
+0.0
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.2
N.D.
+0.2
-0.1
growth on oleic acid
YNB Glucose
N.D.
+0.1
N.D.
+0.3
-0.1
growth on ricinoleic acid
YNB Glucose
N.D.
+0.1
N.D.
+0.8
-0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.2
N.D.
+0.5
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.1
N.D.
+0.8
-0.3
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.0
N.D.
+0.3
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.5
N.D.
-0.5
+0.6
growth on ypd
YPD
N.D.
+0.3
N.D.
+0.2
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.4
N.D.
+0.5
-0.3
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.0
N.D.
+0.5
+0.4
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.3
N.D.
+0.6
+0.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.3
N.D.
+1.0
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.2
N.D.
+0.4
+1.0
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