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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16556 and 16557 are separated by 258 nucleotides
16557 and 16558 are separated by 127 nucleotides
16558 and 16559 are separated by 150 nucleotides
16559 and 16560 are separated by 258 nucleotides
mRNA_8188: 16556 - K05012 CLCN3_4_5 chloride channel 3/4/5, at 625,723 to 629,622
16556
mRNA_8189: 16557 - HMMPfam-alpha/beta hydrolase fold-PF07859,SUPERFAMILY--SSF53474, at 629,881 to 631,255
16557
mRNA_8190: 16558 - KOG2757 Mannose-6-phosphate isomerase, at 631,383 to 634,543
16558
mRNA_8191: 16559 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 634,694 to 637,536
16559
mRNA_8192: 16560 - K12780 REC8 meiotic recombination protein REC8, fungi type, at 637,795 to 641,120
16560
Group
Condition
mRNA
_8188
mRNA
_8189
mRNA
_8190
mRNA
_8191
mRNA
_8192
16556
16557
16558
16559
16560
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.0
-0.3
+0.1
+0.2
-0.0
auxotrophy
Dropout Complete
+0.6
-0.5
-0.5
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
-0.3
-0.6
+0.0
+0.0
auxotrophy
YNB Glucose
+0.3
-0.3
+0.0
-0.4
+0.1
growth on oleic acid
YNB Oleic Acid
+0.1
-0.1
+0.2
-0.3
-0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.3
-0.2
-0.0
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.6
-0.7
+0.2
+0.0
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.1
-0.1
-0.2
+0.2
growth on oleic acid
YNB Glucose
+0.3
-0.1
-0.1
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
+0.0
-0.2
+0.0
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
+0.6
+0.2
-0.1
+0.0
growth on ypd
YPD
+0.2
+0.0
+0.1
-0.1
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
-0.2
-0.1
+0.2
+0.0
growth on ricinoleic acid
YNB Glucose
+0.8
-0.6
+0.1
+0.0
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.8
-0.3
+0.2
-0.1
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.3
+0.3
-0.1
+0.0
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.9
-0.2
+0.0
-0.4
+0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.5
+0.4
-0.1
-0.0
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.6
+0.7
-0.1
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+1.0
-0.1
-0.1
-0.0
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
+1.0
+0.1
+0.1
-0.1
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