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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16557 and 16558 are separated by 127 nucleotides
16558 and 16559 are separated by 150 nucleotides
16559 and 16560 are separated by 258 nucleotides
16560 and 16561 are separated by 202 nucleotides
mRNA_8189: 16557 - HMMPfam-alpha/beta hydrolase fold-PF07859,SUPERFAMILY--SSF53474, at 629,881 to 631,255
16557
mRNA_8190: 16558 - KOG2757 Mannose-6-phosphate isomerase, at 631,383 to 634,543
16558
mRNA_8191: 16559 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 634,694 to 637,536
16559
mRNA_8192: 16560 - K12780 REC8 meiotic recombination protein REC8, fungi type, at 637,795 to 641,120
16560
mRNA_8193: 16561 - Hypothetical Protein, at 641,323 to 644,118
16561
Group
Condition
mRNA
_8189
mRNA
_8190
mRNA
_8191
mRNA
_8192
mRNA
_8193
16557
16558
16559
16560
16561
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
-0.6
+0.0
+0.0
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
+0.1
+0.2
-0.0
-0.6
growth on oleic acid
YNB Glucose
-0.1
-0.1
-0.2
+0.1
-0.4
auxotrophy
Dropout Complete
-0.5
-0.5
-0.2
+0.1
+0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.1
+0.2
+0.0
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.3
-0.2
-0.0
+0.1
+0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.1
-0.2
+0.2
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
+0.0
-0.4
+0.3
+0.2
auxotrophy
YNB Glucose
-0.3
+0.0
-0.4
+0.1
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
+0.2
-0.1
-0.2
+0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
-0.2
+0.0
-0.1
+0.3
growth on oleic acid
YNB Oleic Acid
-0.1
+0.2
-0.3
-0.0
+0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.3
-0.1
+0.0
+0.1
-0.1
growth on ricinoleic acid
YNB Glucose
-0.6
+0.1
+0.0
+0.1
+0.7
ypd buoyancy
40 hrs Median Buoyancy
+0.4
-0.1
-0.0
+0.0
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.1
-0.0
+0.3
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.7
-0.1
-0.1
-0.2
+0.9
facs on lipid accumulation
Sorted High BODIPY Gate
+0.6
+0.2
-0.1
+0.0
+0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.7
+0.2
+0.0
-0.2
+2.1
growth on ypd
YPD
+0.0
+0.1
-0.1
-0.0
+1.4
facs on lipid accumulation
Sorted No BODIPY Gate
+1.0
+0.1
+0.1
-0.1
+1.1
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