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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16558 and 16559 are separated by 150 nucleotides
16559 and 16560 are separated by 258 nucleotides
16560 and 16561 are separated by 202 nucleotides
16561 and 16562 are separated by 285 nucleotides
mRNA_8190: 16558 - KOG2757 Mannose-6-phosphate isomerase, at 631,383 to 634,543
16558
mRNA_8191: 16559 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 634,694 to 637,536
16559
mRNA_8192: 16560 - K12780 REC8 meiotic recombination protein REC8, fungi type, at 637,795 to 641,120
16560
mRNA_8193: 16561 - Hypothetical Protein, at 641,323 to 644,118
16561
mRNA_8194: 16562 - K20794 NAA40, NAT4 N-alpha-acetyltransferase 40, at 644,404 to 645,092
16562
Group
Condition
mRNA
_8190
mRNA
_8191
mRNA
_8192
mRNA
_8193
mRNA
_8194
16558
16559
16560
16561
16562
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
-0.4
+0.3
+0.2
-1.7
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.6
+0.0
+0.0
-0.0
-0.5
growth on oleic acid
YNB Glucose
-0.1
-0.2
+0.1
-0.4
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.2
+0.0
-0.3
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.2
-0.0
-0.6
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
+0.0
-0.1
+0.3
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.0
+0.0
-0.0
+0.1
growth on oleic acid
YNB Oleic Acid
+0.2
-0.3
-0.0
+0.4
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.0
+0.1
+0.0
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-0.1
-0.2
+0.5
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.0
+0.1
-0.1
+0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.2
+0.2
-0.1
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.0
+0.3
+0.2
+0.0
auxotrophy
Dropout Complete
-0.5
-0.2
+0.1
+0.5
+0.6
auxotrophy
YNB Glucose
+0.0
-0.4
+0.1
+0.4
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.1
+0.0
+0.6
+0.0
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.1
-0.2
+0.9
+0.4
growth on ricinoleic acid
YNB Glucose
+0.1
+0.0
+0.1
+0.7
+0.2
growth on ypd
YPD
+0.1
-0.1
-0.0
+1.4
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.1
-0.1
+1.1
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.0
-0.2
+2.1
-0.4
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