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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16560 and 16561 are separated by 202 nucleotides
16561 and 16562 are separated by 285 nucleotides
16562 and 16563 are separated by 487 nucleotides
16563 and 16564 are separated by 110 nucleotides
mRNA_8192: 16560 - K12780 REC8 meiotic recombination protein REC8, fungi type, at 637,795 to 641,120
16560
mRNA_8193: 16561 - Hypothetical Protein, at 641,323 to 644,118
16561
mRNA_8194: 16562 - K20794 NAA40, NAT4 N-alpha-acetyltransferase 40, at 644,404 to 645,092
16562
mRNA_8195: 16563 - Hypothetical Protein, at 645,580 to 648,404
16563
mRNA_8196: 16564 - K13501 TRP1 anthranilate synthase / indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase, at 648,515 to 650,860
16564
Group
Condition
mRNA
_8192
mRNA
_8193
mRNA
_8194
mRNA
_8195
mRNA
_8196
16560
16561
16562
16563
16564
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
+0.2
-1.7
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
-0.3
-0.4
-0.2
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
-0.6
-0.0
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
-0.0
-0.5
-0.1
N.D.
growth on oleic acid
YNB Glucose
+0.1
-0.4
-0.2
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.3
-0.2
-0.0
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.0
+0.1
-0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.1
+0.3
-0.1
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
+0.5
-0.1
+0.2
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.0
+0.2
+0.1
N.D.
growth on oleic acid
YNB Oleic Acid
-0.0
+0.4
-0.1
+0.1
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
+0.6
+0.0
-0.1
N.D.
auxotrophy
YNB Glucose
+0.1
+0.4
+0.3
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
+0.2
+0.0
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.1
+0.4
+0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.9
+0.4
-0.2
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+1.1
+0.0
-0.0
N.D.
growth on ricinoleic acid
YNB Glucose
+0.1
+0.7
+0.2
+0.2
N.D.
growth on ypd
YPD
-0.0
+1.4
-0.2
+0.1
N.D.
auxotrophy
Dropout Complete
+0.1
+0.5
+0.6
+0.1
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
+2.1
-0.4
+0.2
N.D.
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