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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16562 and 16563 are separated by 487 nucleotides
16563 and 16564 are separated by 110 nucleotides
16564 and 16565 are separated by 1377 nucleotides
16565 and 16566 are separated by 226 nucleotides
mRNA_8194: 16562 - K20794 NAA40, NAT4 N-alpha-acetyltransferase 40, at 644,404 to 645,092
16562
mRNA_8195: 16563 - Hypothetical Protein, at 645,580 to 648,404
16563
mRNA_8196: 16564 - K13501 TRP1 anthranilate synthase / indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase, at 648,515 to 650,860
16564
mRNA_8197: 16565 - KOG2922 Uncharacterized conserved protein, at 652,238 to 654,491
16565
mRNA_8198: 16566 - K03190 ureD, ureH urease accessory protein, at 654,718 to 655,775
16566
Group
Condition
mRNA
_8194
mRNA
_8195
mRNA
_8196
mRNA
_8197
mRNA
_8198
16562
16563
16564
16565
16566
ypd buoyancy
40 hrs No Buoyancy Separation
-1.7
+0.0
N.D.
+0.1
-0.1
growth on oleic acid
YNB Glucose
-0.2
+0.1
N.D.
+0.2
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
+0.2
N.D.
-0.2
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.1
N.D.
-0.3
-0.0
growth on oleic acid
YNB Oleic Acid
-0.1
+0.1
N.D.
+0.1
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.0
N.D.
+0.2
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.4
-0.2
N.D.
-0.4
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
-0.0
N.D.
+0.3
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
-0.1
N.D.
+0.0
+0.0
auxotrophy
YNB Glucose
+0.3
-0.3
N.D.
+0.3
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.5
-0.1
N.D.
+0.5
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
-0.2
N.D.
+0.8
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.3
-0.1
N.D.
+0.0
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.4
+0.1
N.D.
+0.2
-0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.1
N.D.
+0.2
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.2
N.D.
-0.4
+0.8
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
+0.1
N.D.
+0.7
-0.3
growth on ypd
YPD
-0.2
+0.1
N.D.
+0.2
+0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
-0.1
N.D.
+0.5
+0.2
auxotrophy
Dropout Complete
+0.6
+0.1
N.D.
+0.3
-0.3
growth on ricinoleic acid
YNB Glucose
+0.2
+0.2
N.D.
-0.1
+0.6
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