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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16564 and 16565 are separated by 1377 nucleotides
16565 and 16566 are separated by 226 nucleotides
16566 and 16567 are separated by 101 nucleotides
16567 and 16568 are separated by 466 nucleotides
mRNA_8196: 16564 - K13501 TRP1 anthranilate synthase / indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase, at 648,515 to 650,860
16564
mRNA_8197: 16565 - KOG2922 Uncharacterized conserved protein, at 652,238 to 654,491
16565
mRNA_8198: 16566 - K03190 ureD, ureH urease accessory protein, at 654,718 to 655,775
16566
mRNA_8199: 16567 - Hypothetical Protein, at 655,877 to 657,716
16567
mRNA_8200: 16568 - KOG4635 Vacuolar import and degradation protein, at 658,183 to 660,127
16568
Group
Condition
mRNA
_8196
mRNA
_8197
mRNA
_8198
mRNA
_8199
mRNA
_8200
16564
16565
16566
16567
16568
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.1
-0.1
-2.4
-0.0
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.4
+0.1
-0.4
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.8
-0.1
-1.5
-0.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.3
-0.0
-0.5
+0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.0
-0.1
-0.8
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.2
-0.2
-0.6
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.3
-0.4
-0.3
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.0
+0.0
-0.1
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.2
+0.1
-0.3
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.7
-0.3
-0.2
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.4
+0.8
-0.4
+0.1
growth on oleic acid
YNB Oleic Acid
N.D.
+0.1
-0.4
+0.4
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.5
+0.1
-0.3
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.5
+0.2
-0.2
-0.1
growth on ricinoleic acid
YNB Glucose
N.D.
-0.1
+0.6
+0.0
+0.1
growth on oleic acid
YNB Glucose
N.D.
+0.2
-0.5
+1.2
-0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.2
-0.4
+1.2
+0.0
growth on ypd
YPD
N.D.
+0.2
+0.4
+0.4
+0.0
auxotrophy
YNB Glucose
N.D.
+0.3
-0.3
+1.1
+0.1
auxotrophy
Dropout Complete
N.D.
+0.3
-0.3
+1.1
+0.0
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.2
-0.1
+1.2
+0.1
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