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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16572 and 16573 are separated by 238 nucleotides
16573 and 16574 are separated by 491 nucleotides
16574 and 16575 are separated by 141 nucleotides
16575 and 16576 are separated by 184 nucleotides
mRNA_8204: 16572 - KOG3289 Uncharacterized conserved protein encoded by sequence overlapping the COX4 gene, at 666,079 to 666,849
16572
mRNA_8205: 16573 - K11339 MORF4L1, MRG15, EAF3 mortality factor 4-like protein 1, at 667,088 to 668,435
16573
mRNA_8206: 16574 - Hypothetical Protein, at 668,927 to 671,971
16574
mRNA_8207: 16575 - K09578 PIN1 peptidyl-prolyl cis-trans isomerase NIMA-interacting 1, at 672,113 to 672,814
16575
mRNA_8208: 16576 - BLAST putative Rho guanyl-nucleotide exchange factor [Rhodo..., at 672,999 to 674,159
16576
Group
Condition
mRNA
_8204
mRNA
_8205
mRNA
_8206
mRNA
_8207
mRNA
_8208
16572
16573
16574
16575
16576
facs on lipid accumulation
Sorted High BODIPY Gate
-1.6
-2.8
+0.0
-0.6
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.8
-2.9
+0.3
+0.1
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.9
-0.8
-0.8
-0.6
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.8
-2.0
-0.0
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-1.6
+0.9
-0.2
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-2.3
+1.1
+0.3
-0.0
N.D.
growth on ricinoleic acid
YNB Glucose
-1.6
+1.0
+0.2
-0.4
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.7
-0.8
+0.4
+0.4
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.9
+0.9
-0.4
-0.2
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.7
+0.4
+0.1
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.8
+1.2
+0.2
-0.7
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.8
+0.9
+0.3
-0.2
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.3
+0.1
+0.3
N.D.
growth on ypd
YPD
+1.3
-1.2
+0.0
+0.2
N.D.
auxotrophy
YNB Glucose
-0.7
+0.9
+0.5
-0.2
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.5
-0.0
-0.1
+0.1
N.D.
auxotrophy
Dropout Complete
-0.4
+0.4
+0.3
+0.3
N.D.
growth on oleic acid
YNB Oleic Acid
-0.2
+0.9
+0.1
-0.2
N.D.
growth on oleic acid
YNB Glucose
-0.3
+0.8
+0.4
-0.0
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.4
+0.0
+0.5
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+1.6
+0.2
+0.1
N.D.
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