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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16574 and 16575 are separated by 141 nucleotides
16575 and 16576 are separated by 184 nucleotides
16576 and 16577 are separated by 245 nucleotides
16577 and 16578 are separated by 196 nucleotides
mRNA_8206: 16574 - Hypothetical Protein, at 668,927 to 671,971
16574
mRNA_8207: 16575 - K09578 PIN1 peptidyl-prolyl cis-trans isomerase NIMA-interacting 1, at 672,113 to 672,814
16575
mRNA_8208: 16576 - BLAST putative Rho guanyl-nucleotide exchange factor [Rhodo..., at 672,999 to 674,159
16576
mRNA_8209: 16577 - K17618 UBLCP1 ubiquitin-like domain-containing CTD phosphatase 1, at 674,405 to 676,070
16577
mRNA_8210: 16578 - BLAST WetA [Penicillium camemberti], at 676,267 to 678,027
16578
Group
Condition
mRNA
_8206
mRNA
_8207
mRNA
_8208
mRNA
_8209
mRNA
_8210
16574
16575
16576
16577
16578
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
+0.4
N.D.
-2.4
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.8
-0.6
N.D.
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.1
N.D.
-0.6
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.7
N.D.
-0.4
+0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
-0.2
N.D.
-0.2
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
-0.6
N.D.
-0.2
+0.5
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.1
N.D.
+0.1
-0.3
growth on oleic acid
YNB Oleic Acid
+0.1
-0.2
N.D.
-0.0
+0.1
growth on ricinoleic acid
YNB Glucose
+0.2
-0.4
N.D.
+0.4
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.1
N.D.
-0.3
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
-0.0
N.D.
-0.4
+0.3
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.3
N.D.
-0.1
+0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.3
-0.2
N.D.
+0.3
+0.1
growth on oleic acid
YNB Glucose
+0.4
-0.0
N.D.
-0.0
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.5
N.D.
+0.0
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
-0.1
N.D.
+0.3
+0.6
growth on ypd
YPD
+0.0
+0.2
N.D.
+0.5
+0.1
auxotrophy
YNB Glucose
+0.5
-0.2
N.D.
+0.4
+0.4
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.0
N.D.
+0.5
+0.5
auxotrophy
Dropout Complete
+0.3
+0.3
N.D.
+0.6
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
+0.1
N.D.
+0.4
+0.7
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