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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16578 and 16579 are separated by 1382 nucleotides
16579 and 16580 are separated by 205 nucleotides
16580 and 16581 are separated by 137 nucleotides
16581 and 16582 are separated by 225 nucleotides
mRNA_8210: 16578 - BLAST WetA [Penicillium camemberti], at 676,267 to 678,027
16578
mRNA_8211: 16579 - K02894 RP-L23e, RPL23 large subunit ribosomal protein L23e, at 679,410 to 680,572
16579
mRNA_8212: 16580 - K17878 NNT1 nicotinamide N-methyltransferase, at 680,778 to 681,996
16580
mRNA_8213: 16581 - KOG1590 Uncharacterized conserved protein, at 682,134 to 683,094
16581
mRNA_8214: 16582 - BLAST NADH-ubiquinone oxidoreductase 9.5 kDa subunit [R..., at 683,320 to 684,168
16582
Group
Condition
mRNA
_8210
mRNA
_8211
mRNA
_8212
mRNA
_8213
mRNA
_8214
16578
16579
16580
16581
16582
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
N.D.
-0.3
-1.4
-0.8
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
N.D.
-0.1
-2.2
-0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
N.D.
+0.0
-1.9
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
N.D.
+0.5
+1.5
-3.9
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
N.D.
+0.0
-2.5
+0.7
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
N.D.
-0.1
-0.5
-1.5
growth on oleic acid
YNB Glucose
+0.2
N.D.
-0.5
-0.5
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.5
N.D.
+0.3
-1.9
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.6
N.D.
+0.1
-0.9
-0.2
auxotrophy
Dropout Complete
+0.2
N.D.
-0.3
+0.3
-0.5
growth on ricinoleic acid
YNB Glucose
-0.1
N.D.
-0.0
-0.8
+0.7
ypd buoyancy
40 hrs Low Buoyancy
+0.1
N.D.
+0.2
-0.6
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.1
N.D.
-0.2
+0.3
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
N.D.
-0.0
-1.3
+1.1
auxotrophy
YNB Glucose
+0.4
N.D.
-0.2
+0.7
-0.5
growth on ypd
YPD
+0.1
N.D.
-0.7
+0.5
+0.5
ypd buoyancy
40 hrs Median Buoyancy
-0.3
N.D.
+0.5
+0.5
+0.0
growth on oleic acid
YNB Oleic Acid
+0.1
N.D.
-0.2
+0.3
+0.6
auxotrophy
YNB Glucose 75mM Arginine
+0.5
N.D.
-0.2
+0.5
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.7
N.D.
-0.2
+1.5
-1.2
ypd buoyancy
40 hrs High Buoyancy
+0.0
N.D.
+0.3
+1.2
-0.2
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