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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16582 and 16583 are separated by 481 nucleotides
16583 and 16584 are separated by 331 nucleotides
16584 and 16585 are separated by 696 nucleotides
16585 and 16586 are separated by 1765 nucleotides
mRNA_8214: 16582 - BLAST NADH-ubiquinone oxidoreductase 9.5 kDa subunit [R..., at 683,320 to 684,168
16582
mRNA_8215: 16583 - ProSiteProfiles-Linker histone H1/H5 globular (H15) domain profile.-PS51504,SUPERFAMILY--SSF46785, at 684,650 to 685,960
16583
mRNA_8216: 16584 - K14376 PAP poly(A) polymerase, at 686,292 to 689,011
16584
mRNA_8217: 16585 - KOG0065 Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily, at 689,708 to 696,121
16585
mRNA_8218: 16586 - K02905 RP-L29e, RPL29 large subunit ribosomal protein L29e, at 697,887 to 698,253
16586
Group
Condition
mRNA
_8214
mRNA
_8215
mRNA
_8216
mRNA
_8217
mRNA
_8218
16582
16583
16584
16585
16586
ypd buoyancy
40 hrs No Buoyancy Separation
-3.9
-1.5
+0.2
-0.2
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.2
-0.1
-1.7
+0.3
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-1.5
-0.2
-1.0
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.8
+0.3
-1.0
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
-0.1
-1.0
-0.0
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.3
-1.6
+0.1
N.D.
auxotrophy
Dropout Complete
-0.5
-0.5
+0.1
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.6
+0.4
-0.7
+0.0
N.D.
auxotrophy
YNB Glucose
-0.5
-0.2
+0.0
-0.2
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.7
-0.0
-0.9
-0.6
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.5
+0.2
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.6
-0.6
-0.1
N.D.
growth on ypd
YPD
+0.5
-0.0
-0.8
+0.2
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.4
+0.4
-0.2
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.3
-0.6
+0.2
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.4
+0.6
-0.1
N.D.
growth on oleic acid
YNB Glucose
-0.2
-0.0
+0.5
-0.1
N.D.
growth on oleic acid
YNB Oleic Acid
+0.6
-0.2
+0.1
-0.2
N.D.
growth on ricinoleic acid
YNB Glucose
+0.7
+0.0
-0.0
-0.1
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+1.1
+0.1
-0.1
-0.3
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.4
+1.2
-0.0
N.D.
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