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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16583 and 16584 are separated by 331 nucleotides
16584 and 16585 are separated by 696 nucleotides
16585 and 16586 are separated by 1765 nucleotides
16586 and 16587 are separated by 297 nucleotides
mRNA_8215: 16583 - ProSiteProfiles-Linker histone H1/H5 globular (H15) domain profile.-PS51504,SUPERFAMILY--SSF46785, at 684,650 to 685,960
16583
mRNA_8216: 16584 - K14376 PAP poly(A) polymerase, at 686,292 to 689,011
16584
mRNA_8217: 16585 - KOG0065 Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily, at 689,708 to 696,121
16585
mRNA_8218: 16586 - K02905 RP-L29e, RPL29 large subunit ribosomal protein L29e, at 697,887 to 698,253
16586
mRNA_8219: 16587 - K15202 GTF3C5, TFC1 general transcription factor 3C polypeptide 5 (transcription factor C subunit 1), at 698,551 to 700,808
16587
Group
Condition
mRNA
_8215
mRNA
_8216
mRNA
_8217
mRNA
_8218
mRNA
_8219
16583
16584
16585
16586
16587
ypd buoyancy
40 hrs No Buoyancy Separation
-1.5
+0.2
-0.2
N.D.
-0.7
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-1.0
+0.0
N.D.
-0.7
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-1.7
+0.3
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-1.0
-0.0
N.D.
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-1.0
+0.0
N.D.
-0.7
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
-0.9
-0.6
N.D.
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
-1.6
+0.1
N.D.
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.4
+0.4
-0.2
N.D.
-0.4
auxotrophy
YNB Glucose 75mM Arginine
+0.6
-0.6
-0.1
N.D.
-0.3
ypd buoyancy
40 hrs High Buoyancy
-0.5
+0.2
-0.1
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
-0.7
+0.0
N.D.
-0.1
auxotrophy
YNB Glucose
-0.2
+0.0
-0.2
N.D.
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
-0.6
+0.2
N.D.
-0.4
ypd buoyancy
40 hrs Median Buoyancy
-0.4
+0.6
-0.1
N.D.
-0.5
auxotrophy
Dropout Complete
-0.5
+0.1
-0.1
N.D.
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.1
-0.3
N.D.
+0.4
growth on oleic acid
YNB Oleic Acid
-0.2
+0.1
-0.2
N.D.
+0.3
growth on ricinoleic acid
YNB Glucose
+0.0
-0.0
-0.1
N.D.
+0.3
growth on oleic acid
YNB Glucose
-0.0
+0.5
-0.1
N.D.
+0.6
growth on ypd
YPD
-0.0
-0.8
+0.2
N.D.
+1.8
auxotrophy
YNB Glucose 75mM Methionine
+0.4
+1.2
-0.0
N.D.
-0.2
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