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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16586 and 16587 are separated by 297 nucleotides
16587 and 16588 are separated by 228 nucleotides
16588 and 16589 are separated by 100 nucleotides
16589 and 16590 are separated by 374 nucleotides
mRNA_8218: 16586 - K02905 RP-L29e, RPL29 large subunit ribosomal protein L29e, at 697,887 to 698,253
16586
mRNA_8219: 16587 - K15202 GTF3C5, TFC1 general transcription factor 3C polypeptide 5 (transcription factor C subunit 1), at 698,551 to 700,808
16587
mRNA_8220: 16588 - KOG3894 SNARE protein Syntaxin 18/UFE1, at 701,037 to 702,340
16588
mRNA_8221: 16589 - KOG3140 Predicted membrane protein, at 702,441 to 703,886
16589
mRNA_8222: 16590 - KOG3140 Predicted membrane protein, at 704,261 to 706,813
16590
Group
Condition
mRNA
_8218
mRNA
_8219
mRNA
_8220
mRNA
_8221
mRNA
_8222
16586
16587
16588
16589
16590
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.4
N.D.
-0.5
-0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.3
N.D.
-0.7
+0.0
auxotrophy
YNB Glucose
N.D.
-0.0
N.D.
-0.9
+0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.2
N.D.
-1.0
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.4
N.D.
-0.1
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.1
N.D.
-0.3
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.4
N.D.
-0.3
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.7
N.D.
-0.0
+0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.1
N.D.
+0.1
-0.3
growth on oleic acid
YNB Oleic Acid
N.D.
+0.3
N.D.
-0.6
+0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.5
N.D.
+0.4
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.1
N.D.
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.7
N.D.
+0.5
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.7
N.D.
+0.6
+0.0
growth on ricinoleic acid
YNB Glucose
N.D.
+0.3
N.D.
-0.0
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.1
N.D.
+0.2
+0.2
growth on oleic acid
YNB Glucose
N.D.
+0.6
N.D.
-0.6
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.4
N.D.
-0.1
+0.0
auxotrophy
Dropout Complete
N.D.
+0.4
N.D.
-0.2
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.4
N.D.
+0.3
+0.2
growth on ypd
YPD
N.D.
+1.8
N.D.
+0.5
-0.1
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