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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16589 and 16590 are separated by 374 nucleotides
16590 and 16591 are separated by 326 nucleotides
16591 and 16592 are separated by 719 nucleotides
16592 and 16593 are separated by 265 nucleotides
mRNA_8221: 16589 - KOG3140 Predicted membrane protein, at 702,441 to 703,886
16589
mRNA_8222: 16590 - KOG3140 Predicted membrane protein, at 704,261 to 706,813
16590
mRNA_8223: 16591 - K00801 FDFT1 farnesyl-diphosphate farnesyltransferase, at 707,140 to 708,844
16591
mRNA_8224: 16592 - K00948 PRPS, prsA ribose-phosphate pyrophosphokinase, at 709,564 to 711,429
16592
mRNA_8225: 16593 - HMMPfam-DSBA-like thioredoxin domain-PF01323,SUPERFAMILY--SSF52833, at 711,695 to 712,857
16593
Group
Condition
mRNA
_8221
mRNA
_8222
mRNA
_8223
mRNA
_8224
mRNA
_8225
16589
16590
16591
16592
16593
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
-0.4
N.D.
N.D.
-0.7
ypd buoyancy
40 hrs Low Buoyancy
-0.5
-0.1
N.D.
N.D.
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.1
N.D.
N.D.
-0.5
growth on oleic acid
YNB Oleic Acid
-0.6
+0.1
N.D.
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-1.0
+0.3
N.D.
N.D.
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.3
N.D.
N.D.
-0.3
auxotrophy
YNB Glucose
-0.9
+0.1
N.D.
N.D.
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.3
N.D.
N.D.
-0.5
auxotrophy
YNB Glucose 75mM Arginine
-0.7
+0.0
N.D.
N.D.
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.4
-0.1
N.D.
N.D.
-0.5
ypd buoyancy
40 hrs No Buoyancy Separation
+0.6
+0.0
N.D.
N.D.
-0.8
growth on oleic acid
YNB Glucose
-0.6
+0.3
N.D.
N.D.
+0.2
auxotrophy
Dropout Complete
-0.2
+0.2
N.D.
N.D.
+0.2
growth on ricinoleic acid
YNB Glucose
-0.0
-0.1
N.D.
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
-0.0
N.D.
N.D.
+0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
+0.2
N.D.
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.2
N.D.
N.D.
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.0
N.D.
N.D.
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
+0.1
N.D.
N.D.
-0.1
growth on ypd
YPD
+0.5
-0.1
N.D.
N.D.
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+0.2
N.D.
N.D.
+0.9
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