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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16592 and 16593 are separated by 265 nucleotides
16593 and 16594 are separated by 1101 nucleotides
16594 and 16595 are separated by 313 nucleotides
16595 and 16596 are separated by 2 nucleotides
mRNA_8224: 16592 - K00948 PRPS, prsA ribose-phosphate pyrophosphokinase, at 709,564 to 711,429
16592
mRNA_8225: 16593 - HMMPfam-DSBA-like thioredoxin domain-PF01323,SUPERFAMILY--SSF52833, at 711,695 to 712,857
16593
mRNA_8226: 16594 - KOG0849 Transcription factor PRD and related proteins, contain PAX and HOX domains, at 713,959 to 715,025
16594
mRNA_8227: 16595 - BLAST Post-SET domain protein [Cordyceps confragosa RCEF 1005], at 715,339 to 716,197
16595
mRNA_8228: 16596 - K11648 SMARCB1, SNF5, INI1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1, at 716,200 to 719,512
16596
Group
Condition
mRNA
_8224
mRNA
_8225
mRNA
_8226
mRNA
_8227
mRNA
_8228
16592
16593
16594
16595
16596
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.8
-2.7
+0.0
-0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.0
-0.6
-0.2
-0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.0
-0.0
+0.1
-1.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.5
-0.5
-0.2
+0.1
auxotrophy
YNB Glucose
N.D.
+0.2
-0.6
-0.3
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.7
+0.2
+0.0
-0.5
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.5
-0.3
-0.0
-0.0
auxotrophy
Dropout Complete
N.D.
+0.2
-0.5
-0.2
-0.3
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.2
-0.4
-0.2
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.3
+0.4
-0.0
-0.7
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.5
+0.1
-0.1
-0.1
growth on oleic acid
YNB Glucose
N.D.
+0.2
-0.1
+0.0
-0.4
growth on ypd
YPD
N.D.
+0.3
-0.1
+0.0
-0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.2
+0.3
-0.0
+0.1
growth on oleic acid
YNB Oleic Acid
N.D.
-0.1
+0.7
+0.0
-0.3
growth on ricinoleic acid
YNB Glucose
N.D.
+0.3
+0.6
-0.1
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.9
+1.0
-0.1
-0.8
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.1
+0.4
+0.1
+0.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.5
-0.0
+0.1
+0.7
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.1
+0.6
+0.2
+1.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.5
+1.5
-0.2
+0.7
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