Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 16593 and 16594 are separated by 1101 nucleotides16594 and 16595 are separated by 313 nucleotides16595 and 16596 are separated by 2 nucleotides16596 and 16597 are separated by 567 nucleotides mRNA_8225: 16593 - HMMPfam-DSBA-like thioredoxin domain-PF01323,SUPERFAMILY--SSF52833, at 711,695 to 712,857 16593 mRNA_8226: 16594 - KOG0849 Transcription factor PRD and related proteins, contain PAX and HOX domains, at 713,959 to 715,025 16594 mRNA_8227: 16595 - BLAST Post-SET domain protein [Cordyceps confragosa RCEF 1005], at 715,339 to 716,197 16595 mRNA_8228: 16596 - K11648 SMARCB1, SNF5, INI1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1, at 716,200 to 719,512 16596 mRNA_8229: 16597 - K04630 GNAI guanine nucleotide-binding protein G(i) subunit alpha, at 720,080 to 721,710 16597
Group Condition mRNA_8225 mRNA_8226 mRNA_8227 mRNA_8228 mRNA_8229
16593 16594 16595 16596 16597
ypd buoyancy 40 hrs No Buoyancy Separation -0.8 -2.7 +0.0 -0.1 -0.3
auxotrophy YNB Glucose 75mM Methionine -0.0 -0.6 -0.2 -0.5 -0.2
facs on lipid accumulation Sorted Low BODIPY Gate -0.5 -0.5 -0.2 +0.1 -0.2
auxotrophy YNB Glucose +0.2 -0.6 -0.3 -0.3 -0.2
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.0 -0.0 +0.1 -1.2 +0.1
facs on lipid accumulation Sorted No BODIPY Gate -0.7 +0.2 +0.0 -0.5 -0.1
auxotrophy YNB Glucose 75mM Arginine +0.2 -0.4 -0.2 -0.4 -0.2
auxotrophy Dropout Complete +0.2 -0.5 -0.2 -0.3 -0.1
ypd buoyancy 40 hrs High Buoyancy -0.5 -0.3 -0.0 -0.0 +0.0
facs on lipid accumulation Sorted High BODIPY Gate -0.3 +0.4 -0.0 -0.7 -0.1
ypd buoyancy 40 hrs Median Buoyancy -0.5 +0.1 -0.1 -0.1 -0.1
growth on oleic acid YNB Glucose +0.2 -0.1 +0.0 -0.4 -0.1
growth on oleic acid YNB Oleic Acid -0.1 +0.7 +0.0 -0.3 -0.4
ypd buoyancy 40 hrs Low Buoyancy -0.2 +0.3 -0.0 +0.1 -0.1
growth on ypd YPD +0.3 -0.1 +0.0 -0.2 -0.0
growth on ricinoleic acid YNB Glucose +0.3 +0.6 -0.1 +0.1 -0.1
growth on ricinoleic acid YNB Ricinoleic Acid +0.9 +1.0 -0.1 -0.8 +0.1
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.1 +0.4 +0.1 +0.7 +0.1
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.5 -0.0 +0.1 +0.7 -0.0
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.1 +0.6 +0.2 +1.1 -0.1
growth on ricinoleic acid YNB Methylricinoleic Acid +0.5 +1.5 -0.2 +0.7 -0.2
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