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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16593 and 16594 are separated by 1101 nucleotides
16594 and 16595 are separated by 313 nucleotides
16595 and 16596 are separated by 2 nucleotides
16596 and 16597 are separated by 567 nucleotides
mRNA_8225: 16593 - HMMPfam-DSBA-like thioredoxin domain-PF01323,SUPERFAMILY--SSF52833, at 711,695 to 712,857
16593
mRNA_8226: 16594 - KOG0849 Transcription factor PRD and related proteins, contain PAX and HOX domains, at 713,959 to 715,025
16594
mRNA_8227: 16595 - BLAST Post-SET domain protein [Cordyceps confragosa RCEF 1005], at 715,339 to 716,197
16595
mRNA_8228: 16596 - K11648 SMARCB1, SNF5, INI1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1, at 716,200 to 719,512
16596
mRNA_8229: 16597 - K04630 GNAI guanine nucleotide-binding protein G(i) subunit alpha, at 720,080 to 721,710
16597
Group
Condition
mRNA
_8225
mRNA
_8226
mRNA
_8227
mRNA
_8228
mRNA
_8229
16593
16594
16595
16596
16597
ypd buoyancy
40 hrs No Buoyancy Separation
-0.8
-2.7
+0.0
-0.1
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.0
-0.6
-0.2
-0.5
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.5
-0.5
-0.2
+0.1
-0.2
auxotrophy
YNB Glucose
+0.2
-0.6
-0.3
-0.3
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
-0.0
+0.1
-1.2
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.7
+0.2
+0.0
-0.5
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.4
-0.2
-0.4
-0.2
auxotrophy
Dropout Complete
+0.2
-0.5
-0.2
-0.3
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.5
-0.3
-0.0
-0.0
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
+0.4
-0.0
-0.7
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.5
+0.1
-0.1
-0.1
-0.1
growth on oleic acid
YNB Glucose
+0.2
-0.1
+0.0
-0.4
-0.1
growth on oleic acid
YNB Oleic Acid
-0.1
+0.7
+0.0
-0.3
-0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.3
-0.0
+0.1
-0.1
growth on ypd
YPD
+0.3
-0.1
+0.0
-0.2
-0.0
growth on ricinoleic acid
YNB Glucose
+0.3
+0.6
-0.1
+0.1
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.9
+1.0
-0.1
-0.8
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.4
+0.1
+0.7
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.5
-0.0
+0.1
+0.7
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.6
+0.2
+1.1
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.5
+1.5
-0.2
+0.7
-0.2
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