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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16596 and 16597 are separated by 567 nucleotides
16597 and 16598 are separated by 916 nucleotides
16598 and 16599 are separated by 505 nucleotides
16599 and 16600 are separated by 162 nucleotides
mRNA_8228: 16596 - K11648 SMARCB1, SNF5, INI1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1, at 716,200 to 719,512
16596
mRNA_8229: 16597 - K04630 GNAI guanine nucleotide-binding protein G(i) subunit alpha, at 720,080 to 721,710
16597
mRNA_8230: 16598 - K09668 LARGE glycosyltransferase-like protein LARGE, at 722,627 to 724,673
16598
mRNA_8231: 16599 - KOG0927 Predicted transporter (ABC superfamily), at 725,179 to 727,142
16599
mRNA_8232: 16600 - K12623 LSM4 U6 snRNA-associated Sm-like protein LSm4, at 727,305 to 728,231
16600
Group
Condition
mRNA
_8228
mRNA
_8229
mRNA
_8230
mRNA
_8231
mRNA
_8232
16596
16597
16598
16599
16600
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.2
-1.2
-0.0
-0.9
facs on lipid accumulation
Sorted No BODIPY Gate
-0.5
-0.1
-0.4
+0.2
-0.6
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.3
-0.7
+0.5
-0.8
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-1.2
+0.1
-0.4
-0.0
+0.5
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.1
-0.3
-0.1
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.7
-0.1
+0.0
+0.1
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.0
+0.0
-0.3
+0.0
-0.3
auxotrophy
YNB Glucose
-0.3
-0.2
+0.3
-0.0
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.4
-0.2
+0.4
+0.1
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.5
-0.2
+0.4
+0.3
+0.3
auxotrophy
Dropout Complete
-0.3
-0.1
+0.9
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.7
-0.0
+0.2
-0.4
+0.0
growth on ypd
YPD
-0.2
-0.0
+0.1
+0.2
+0.7
growth on ricinoleic acid
YNB Glucose
+0.1
-0.1
+1.1
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.7
+0.1
-0.1
-0.1
+0.1
growth on oleic acid
YNB Glucose
-0.4
-0.1
+0.7
+0.1
+0.6
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.1
+1.3
-0.1
-0.2
growth on oleic acid
YNB Oleic Acid
-0.3
-0.4
+2.1
-0.1
+0.7
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.8
+0.1
+3.0
-0.4
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+1.1
-0.1
+1.4
+0.0
+0.7
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.7
-0.2
+3.1
-0.0
+1.0
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