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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16598 and 16599 are separated by 505 nucleotides
16599 and 16600 are separated by 162 nucleotides
16600 and 16601 are separated by 205 nucleotides
16601 and 16602 are separated by 225 nucleotides
mRNA_8230: 16598 - K09668 LARGE glycosyltransferase-like protein LARGE, at 722,627 to 724,673
16598
mRNA_8231: 16599 - KOG0927 Predicted transporter (ABC superfamily), at 725,179 to 727,142
16599
mRNA_8232: 16600 - K12623 LSM4 U6 snRNA-associated Sm-like protein LSm4, at 727,305 to 728,231
16600
mRNA_8233: 16601 - K13113 UBL5, HUB1 ubiquitin-like protein 5, at 728,437 to 729,216
16601
mRNA_8234: 16602 - KOG3702 Nuclear polyadenylated RNA binding protein, at 729,442 to 731,463
16602
Group
Condition
mRNA
_8230
mRNA
_8231
mRNA
_8232
mRNA
_8233
mRNA
_8234
16598
16599
16600
16601
16602
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.2
-0.0
-0.9
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.7
+0.5
-0.8
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
+0.2
-0.6
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.0
-0.3
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.3
-0.1
-0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.4
+0.0
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.1
+0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
-0.0
+0.5
N.D.
N.D.
auxotrophy
YNB Glucose
+0.3
-0.0
-0.1
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
+0.1
+0.1
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.4
+0.1
+0.1
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
+1.1
-0.1
-0.1
N.D.
N.D.
auxotrophy
Dropout Complete
+0.9
+0.1
-0.2
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.4
+0.3
+0.3
N.D.
N.D.
growth on ypd
YPD
+0.1
+0.2
+0.7
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+1.3
-0.1
-0.2
N.D.
N.D.
growth on oleic acid
YNB Glucose
+0.7
+0.1
+0.6
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+1.4
+0.0
+0.7
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
+2.1
-0.1
+0.7
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+3.0
-0.4
+0.4
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+3.1
-0.0
+1.0
N.D.
N.D.
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