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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16600 and 16601 are separated by 205 nucleotides
16601 and 16602 are separated by 225 nucleotides
16602 and 16603 are separated by 417 nucleotides
16603 and 16604 are separated by 169 nucleotides
mRNA_8232: 16600 - K12623 LSM4 U6 snRNA-associated Sm-like protein LSm4, at 727,305 to 728,231
16600
mRNA_8233: 16601 - K13113 UBL5, HUB1 ubiquitin-like protein 5, at 728,437 to 729,216
16601
mRNA_8234: 16602 - KOG3702 Nuclear polyadenylated RNA binding protein, at 729,442 to 731,463
16602
mRNA_8235: 16603 - Hypothetical Protein, at 731,881 to 732,842
16603
mRNA_8236: 16604 - Interpro Fungal protein of unknown function (DUF1770) 0, at 733,012 to 733,833
16604
Group
Condition
mRNA
_8232
mRNA
_8233
mRNA
_8234
mRNA
_8235
mRNA
_8236
16600
16601
16602
16603
16604
facs on lipid accumulation
Sorted No BODIPY Gate
-0.6
N.D.
N.D.
-0.3
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.9
N.D.
N.D.
-0.3
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.8
N.D.
N.D.
+0.6
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
N.D.
N.D.
-0.3
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.3
N.D.
N.D.
-0.3
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.1
N.D.
N.D.
-0.2
+0.3
auxotrophy
YNB Glucose
-0.1
N.D.
N.D.
+0.0
+0.2
growth on ricinoleic acid
YNB Glucose
-0.1
N.D.
N.D.
+0.3
+0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.1
N.D.
N.D.
-0.3
+0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.3
N.D.
N.D.
-0.2
+0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.2
N.D.
N.D.
+0.1
+0.4
growth on ypd
YPD
+0.7
N.D.
N.D.
-0.7
+0.4
auxotrophy
Dropout Complete
-0.2
N.D.
N.D.
+0.0
+0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
N.D.
N.D.
+0.3
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
N.D.
N.D.
+0.4
+0.1
growth on oleic acid
YNB Glucose
+0.6
N.D.
N.D.
+0.2
-0.2
growth on oleic acid
YNB Oleic Acid
+0.7
N.D.
N.D.
+0.1
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
N.D.
N.D.
+0.3
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.7
N.D.
N.D.
+0.1
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+1.0
N.D.
N.D.
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
N.D.
N.D.
+0.6
+0.5
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