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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16602 and 16603 are separated by 417 nucleotides
16603 and 16604 are separated by 169 nucleotides
16604 and 16605 are separated by 393 nucleotides
16605 and 16606 are separated by 609 nucleotides
mRNA_8234: 16602 - KOG3702 Nuclear polyadenylated RNA binding protein, at 729,442 to 731,463
16602
mRNA_8235: 16603 - Hypothetical Protein, at 731,881 to 732,842
16603
mRNA_8236: 16604 - Interpro Fungal protein of unknown function (DUF1770) 0, at 733,012 to 733,833
16604
mRNA_8237: 16605 - K04345 PKA protein kinase A, at 734,227 to 736,264
16605
mRNA_8238: 16606 - KOG2551 Phospholipase/carboxyhydrolase, at 736,874 to 737,919
16606
Group
Condition
mRNA
_8234
mRNA
_8235
mRNA
_8236
mRNA
_8237
mRNA
_8238
16602
16603
16604
16605
16606
growth on ypd
YPD
N.D.
-0.7
+0.4
-0.1
-0.5
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.3
+0.2
-0.5
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.3
-0.3
+0.1
-0.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.2
+0.3
-0.3
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.6
-0.4
-0.5
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.3
-0.1
+0.7
-0.3
growth on oleic acid
YNB Glucose
N.D.
+0.2
-0.2
+0.4
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.3
+0.2
+0.2
+0.0
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.1
+0.4
-0.1
-0.1
growth on oleic acid
YNB Oleic Acid
N.D.
+0.1
-0.0
+0.4
-0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.3
+0.4
+0.5
-0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.2
+0.2
+0.4
+0.2
auxotrophy
YNB Glucose
N.D.
+0.0
+0.2
+0.5
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.4
+0.1
+0.1
+0.2
auxotrophy
Dropout Complete
N.D.
+0.0
+0.6
+0.6
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.6
+0.5
-0.4
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.2
-0.1
+1.2
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.3
+0.4
+0.3
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.1
+0.3
+0.7
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.3
-0.2
+1.3
-0.1
growth on ricinoleic acid
YNB Glucose
N.D.
+0.3
+0.0
+1.0
+0.1
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