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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16603 and 16604 are separated by 169 nucleotides
16604 and 16605 are separated by 393 nucleotides
16605 and 16606 are separated by 609 nucleotides
16606 and 16607 are separated by 287 nucleotides
mRNA_8235: 16603 - Hypothetical Protein, at 731,881 to 732,842
16603
mRNA_8236: 16604 - Interpro Fungal protein of unknown function (DUF1770) 0, at 733,012 to 733,833
16604
mRNA_8237: 16605 - K04345 PKA protein kinase A, at 734,227 to 736,264
16605
mRNA_8238: 16606 - KOG2551 Phospholipase/carboxyhydrolase, at 736,874 to 737,919
16606
mRNA_8239: 16607 - K00101 E1.1.2.3, lldD L-lactate dehydrogenase (cytochrome), at 738,207 to 740,675
16607
Group
Condition
mRNA
_8235
mRNA
_8236
mRNA
_8237
mRNA
_8238
mRNA
_8239
16603
16604
16605
16606
16607
growth on ypd
YPD
-0.7
+0.4
-0.1
-0.5
-0.6
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
-0.3
+0.1
-0.0
-0.5
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-0.1
+0.7
-0.3
-0.4
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.2
-0.5
-0.1
+0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.3
-0.3
-0.3
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.4
+0.5
-0.2
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
+0.6
-0.4
-0.5
+0.3
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
+0.2
+0.2
+0.0
+0.0
growth on oleic acid
YNB Glucose
+0.2
-0.2
+0.4
-0.3
+0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.2
+0.4
+0.2
-0.3
auxotrophy
YNB Glucose
+0.0
+0.2
+0.5
-0.1
-0.3
growth on oleic acid
YNB Oleic Acid
+0.1
-0.0
+0.4
-0.2
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.4
-0.1
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
+0.1
+0.1
+0.2
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.6
+0.5
-0.4
+0.3
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+0.4
+0.3
+0.2
-0.2
auxotrophy
Dropout Complete
+0.0
+0.6
+0.6
-0.3
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-0.1
+1.2
-0.2
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.3
+0.7
+0.0
+0.0
growth on ricinoleic acid
YNB Glucose
+0.3
+0.0
+1.0
+0.1
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
-0.2
+1.3
-0.1
+0.2
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