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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16605 and 16606 are separated by 609 nucleotides
16606 and 16607 are separated by 287 nucleotides
16607 and 16608 are separated by 300 nucleotides
16608 and 16609 are separated by 179 nucleotides
mRNA_8237: 16605 - K04345 PKA protein kinase A, at 734,227 to 736,264
16605
mRNA_8238: 16606 - KOG2551 Phospholipase/carboxyhydrolase, at 736,874 to 737,919
16606
mRNA_8239: 16607 - K00101 E1.1.2.3, lldD L-lactate dehydrogenase (cytochrome), at 738,207 to 740,675
16607
mRNA_8240: 16608 - K14350 AADACL2 arylacetamide deacetylase-like 2, at 740,976 to 744,696
16608
mRNA_8241: 16609 - Hypothetical Protein, at 744,876 to 746,640
16609
Group
Condition
mRNA
_8237
mRNA
_8238
mRNA
_8239
mRNA
_8240
mRNA
_8241
16605
16606
16607
16608
16609
growth on ypd
YPD
-0.1
-0.5
-0.6
+0.1
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
+0.3
+0.1
-0.4
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.0
-0.5
+0.0
-0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.3
-0.3
+0.1
-0.1
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.5
-0.1
+0.3
-0.1
+0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.1
+0.2
-0.2
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.7
-0.3
-0.4
-0.1
+0.1
growth on oleic acid
YNB Glucose
+0.4
-0.3
+0.0
+0.4
-0.4
growth on oleic acid
YNB Oleic Acid
+0.4
-0.2
+0.1
+0.4
-0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
+0.3
-0.2
+0.2
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.5
-0.2
-0.4
+0.2
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
+0.0
+0.0
+0.2
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.2
-0.2
+0.3
+0.1
auxotrophy
YNB Glucose
+0.5
-0.1
-0.3
+0.2
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+0.2
-0.2
+0.2
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.7
+0.0
+0.0
+0.2
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+1.2
-0.2
-0.0
+0.4
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.4
+0.2
-0.3
+0.5
+0.5
auxotrophy
Dropout Complete
+0.6
-0.3
-0.0
+0.2
+0.8
growth on ricinoleic acid
YNB Glucose
+1.0
+0.1
+0.0
+0.3
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+1.3
-0.1
+0.2
+0.5
-0.1
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