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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16609 and 16610 are separated by 299 nucleotides
16610 and 16611 are separated by 400 nucleotides
16611 and 16612 are separated by 167 nucleotides
16612 and 16613 are separated by 293 nucleotides
mRNA_8241: 16609 - Hypothetical Protein, at 744,876 to 746,640
16609
mRNA_8242: 16610 - KOG3319 Predicted membrane protein, at 746,940 to 748,080
16610
mRNA_8243: 16611 - K08739 MLH3 DNA mismatch repair protein MLH3, at 748,481 to 751,637
16611
mRNA_8244: 16612 - K14786 KRI1 protein KRI1, at 751,805 to 754,209
16612
mRNA_8245: 16613 - HMMPfam-Mitochondrial carrier protein-PF00153,ProSiteProfiles-Solute carrier (Solcar) repeat profile.-PS50920,SUPERFAMILY--SSF103506, at 754,503 to 755,818
16613
Group
Condition
mRNA
_8241
mRNA
_8242
mRNA
_8243
mRNA
_8244
mRNA
_8245
16609
16610
16611
16612
16613
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-0.9
-0.1
N.D.
-1.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.5
-0.2
N.D.
-1.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
-1.9
-0.1
N.D.
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-1.3
+0.3
N.D.
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
+1.0
-0.0
N.D.
-1.7
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.6
+0.2
N.D.
-0.1
growth on oleic acid
YNB Oleic Acid
-0.6
+0.4
-0.4
N.D.
-0.1
growth on oleic acid
YNB Glucose
-0.4
-0.0
-0.3
N.D.
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
+0.3
-0.2
N.D.
+0.0
growth on ricinoleic acid
YNB Glucose
+0.2
+0.2
+0.3
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+1.3
-0.0
N.D.
-0.8
growth on ypd
YPD
-0.3
+0.7
+0.3
N.D.
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.7
+0.0
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+1.1
+0.1
N.D.
-0.6
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.8
-0.1
N.D.
+0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.3
+0.0
+0.0
N.D.
+0.8
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.5
+0.4
N.D.
+0.4
auxotrophy
YNB Glucose
+0.3
+1.2
-0.0
N.D.
+0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.5
+0.1
+0.1
N.D.
+0.9
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+1.4
+0.3
N.D.
-0.3
auxotrophy
Dropout Complete
+0.8
+0.7
+0.4
N.D.
+0.5
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