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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16614 and 16615 are separated by 325 nucleotides
16615 and 16616 are separated by 1082 nucleotides
16616 and 16617 are separated by 457 nucleotides
16617 and 16618 are separated by 127 nucleotides
mRNA_8246: 16614 - Hypothetical Protein, at 756,174 to 757,457
16614
mRNA_8247: 16615 - K01426 E3.5.1.4, amiE amidase, at 757,783 to 759,749
16615
mRNA_8248: 16616 - KOG2945 Predicted RNA-binding protein, at 760,832 to 762,310
16616
mRNA_8249: 16617 - SUPERFAMILY--SSF52047, at 762,768 to 764,331
16617
mRNA_8250: 16618 - K17069 MET17 O-acetylhomoserine/O-acetylserine sulfhydrylase, at 764,459 to 766,227
16618
Group
Condition
mRNA
_8246
mRNA
_8247
mRNA
_8248
mRNA
_8249
mRNA
_8250
16614
16615
16616
16617
16618
ypd buoyancy
40 hrs No Buoyancy Separation
-3.1
+0.1
-1.0
-0.6
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.8
-0.5
-2.1
-0.3
+0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.7
-1.0
-0.3
-0.1
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.5
-0.2
-0.7
-0.4
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
-0.4
-1.4
+0.0
+0.4
ypd buoyancy
40 hrs Median Buoyancy
-0.5
-0.6
-0.2
-0.2
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.1
+0.5
-0.5
-0.1
+0.4
growth on ypd
YPD
-0.5
+0.2
+0.0
-0.3
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
+0.3
-0.6
-0.2
+0.4
growth on ricinoleic acid
YNB Glucose
-1.0
+0.1
+0.4
-0.0
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-0.5
+0.2
-0.4
+0.4
auxotrophy
Dropout Complete
+0.9
-0.8
+0.0
-0.2
+0.2
growth on oleic acid
YNB Glucose
+0.2
+0.0
-0.2
+0.0
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.0
+0.3
+0.0
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+1.0
+0.1
+0.1
-0.4
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
+0.3
+0.8
+0.0
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.6
-0.1
+1.1
+0.0
-0.3
growth on oleic acid
YNB Oleic Acid
+0.8
+0.4
+0.1
-0.0
+0.2
auxotrophy
YNB Glucose
+1.7
-0.4
+0.2
-0.0
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+1.7
+0.4
-0.2
-0.3
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+1.1
+0.5
+0.6
+0.0
-0.2
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