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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16617 and 16618 are separated by 127 nucleotides
16618 and 16619 are separated by 652 nucleotides
16619 and 16620 are separated by 569 nucleotides
16620 and 16621 are separated by 705 nucleotides
mRNA_8249: 16617 - SUPERFAMILY--SSF52047, at 762,768 to 764,331
16617
mRNA_8250: 16618 - K17069 MET17 O-acetylhomoserine/O-acetylserine sulfhydrylase, at 764,459 to 766,227
16618
mRNA_8251: 16619 - HMMPfam-SacI homology domain-PF02383,ProSiteProfiles-Sac phosphatase domain profile.-PS50275, at 766,880 to 770,400
16619
mRNA_8252: 16620 - HMMPfam-Domain of unknown function (DUF4451)-PF14616, at 770,970 to 773,846
16620
mRNA_8253: 16621 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 774,552 to 775,844
16621
Group
Condition
mRNA
_8249
mRNA
_8250
mRNA
_8251
mRNA
_8252
mRNA
_8253
16617
16618
16619
16620
16621
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
-0.3
-0.4
N.D.
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
+0.4
-0.6
N.D.
-0.7
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
+0.3
+0.4
N.D.
-1.2
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.3
-0.1
N.D.
-0.6
ypd buoyancy
40 hrs High Buoyancy
-0.4
-0.3
+0.3
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.4
+0.2
+0.1
N.D.
-0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.1
+0.2
N.D.
-0.2
auxotrophy
YNB Glucose
-0.0
+0.2
+0.2
N.D.
-0.7
growth on ricinoleic acid
YNB Glucose
-0.0
+0.4
-0.1
N.D.
-0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
-0.2
+0.3
N.D.
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
-0.3
+0.3
N.D.
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.1
+0.3
N.D.
-0.1
auxotrophy
Dropout Complete
-0.2
+0.2
+0.2
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
-0.2
+0.1
N.D.
+0.4
growth on ypd
YPD
-0.3
+0.1
+0.3
N.D.
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
+0.4
+0.2
N.D.
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.4
+0.0
N.D.
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.4
+0.2
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
-0.2
+0.3
N.D.
+0.5
growth on oleic acid
YNB Glucose
+0.0
+0.2
+0.1
N.D.
+0.4
growth on oleic acid
YNB Oleic Acid
-0.0
+0.2
+0.2
N.D.
+0.5
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