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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16620 and 16621 are separated by 705 nucleotides
16621 and 16622 are separated by 383 nucleotides
16622 and 16623 are separated by 353 nucleotides
16623 and 16624 are separated by 677 nucleotides
mRNA_8252: 16620 - HMMPfam-Domain of unknown function (DUF4451)-PF14616, at 770,970 to 773,846
16620
mRNA_8253: 16621 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 774,552 to 775,844
16621
mRNA_8254: 16622 - HMMPfam-Stc1 domain-PF12898, at 776,228 to 777,333
16622
mRNA_8255: 16623 - K01792 E5.1.3.15 glucose-6-phosphate 1-epimerase, at 777,687 to 778,914
16623
mRNA_8256: 16624 - K11324 DMAP1, SWC4, EAF2 DNA methyltransferase 1-associated protein 1, at 779,592 to 781,358
16624
Group
Condition
mRNA
_8252
mRNA
_8253
mRNA
_8254
mRNA
_8255
mRNA
_8256
16620
16621
16622
16623
16624
auxotrophy
YNB Glucose
N.D.
-0.7
-0.1
-0.5
N.D.
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.6
+0.1
-0.4
N.D.
growth on ypd
YPD
N.D.
+0.4
+0.2
-1.3
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.4
+0.1
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.1
-0.0
-0.4
N.D.
auxotrophy
Dropout Complete
N.D.
-0.2
+0.1
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.4
-0.1
-0.7
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.5
-0.1
-0.7
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-1.2
+0.1
+0.8
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.7
-0.0
+0.5
N.D.
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.3
+0.0
+0.1
N.D.
growth on ricinoleic acid
YNB Glucose
N.D.
-0.6
+0.3
+0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.1
+0.0
-0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.2
-0.1
+0.2
N.D.
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.2
+0.0
+0.3
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.3
-0.1
-0.0
N.D.
growth on oleic acid
YNB Glucose
N.D.
+0.4
-0.0
-0.1
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.3
-0.1
+0.1
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.3
-0.0
+0.3
N.D.
growth on oleic acid
YNB Oleic Acid
N.D.
+0.5
+0.1
+0.0
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.2
+0.2
+0.7
N.D.
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